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Prior to the parallel solution of a large linear system, it is required to perform a partitioning of its equations/unknowns. Standard partitioning algorithms are designed using the considerations of the efficiency of the parallel…
Motivation: The clinical efficacy of antibody therapeutics critically depends on high-affinity target engagement, yet laboratory affinity-maturation campaigns are slow and costly. In computational settings, most protein language models…
In this paper, we develop an orthogonal precoding scheme for integer-forcing (IF) linear receivers using the steepest gradient algorithm. Although this scheme can be viewed as a special case of the unitary precoded integer-forcing (UPIF),…
We propose two new classes of time integrators for stiff DEs: the implicit-explicit exponential (IMEXP) and the hybrid exponential methods. In contrast to the existing exponential schemes, the new methods offer significant computational…
We propose a novel preconditioned inexact primal-dual interior point method for constrained convex quadratic programming problems. The algorithm we describe invokes the preconditioned conjugate gradient method on a new reduced Schur…
In this article, we introduce a fast and memory efficient solver for sparse matrices arising from the finite element discretization of elliptic partial differential equations (PDEs). We use a fast direct (but approximate) multifrontal…
In this work we propose a novel block preconditioner, labelled Explicit Decoupling Factor Approximation (EDFA), to accelerate the convergence of Krylov subspace solvers used to address the sequence of non-symmetric systems of linear…
In this work, we propose simple and efficient tridiagonal computed sparse preconditioners for improving the condition number for large compressed Electric Field Integral Equation (EFIE) Method of Moment (MoM) matrix. The preconditioner…
This paper presents a new stochastic preconditioning approach. For symmetric diagonally-dominant M-matrices, we prove that an incomplete LDL factorization can be obtained from random walks, and used as a preconditioner for an iterative…
Domain decomposition methods are among the most efficient for solving sparse linear systems of equations. Their effectiveness relies on a judiciously chosen coarse space. Originally introduced and theoretically proved to be efficient for…
We present safe active incremental feature selection~(SAIF) to scale up the computation of LASSO solutions. SAIF does not require a solution from a heavier penalty parameter as in sequential screening or updating the full model for each…
Pre-conditioning is a well-known concept that can significantly improve the convergence of optimization algorithms. For noise-free problems, where good pre-conditioners are not known a priori, iterative linear algebra methods offer one way…
We describe a second-order accurate approach to sparsifying the off-diagonal blocks in the hierarchical approximate factorizations of sparse symmetric positive definite matrices. The norm of the error made by the new approach depends…
In massive multiple-input multiple-output (MIMO) systems, achieving high spectral efficiency (SE) often requires advanced precoding algorithms whose complexity scales rapidly with the number of antennas, limiting practical deployment. In…
Strain smoothing methods such as the smoothed finite element methods (S-FEMs) and the strain-smoothed element~(SSE) method have successfully improved the performance of finite elements, and there have been numerous applications of them in…
A method for enhancing the stability and robustness of explicit schemes in computational fluid dynamics is presented. The method is based in reformulating explicit schemes in matrix form, which cane modified gradually into semi or…
This work presents a matrix-free finite element solver for finite-strain elasticity adopting an $hp$-multigrid preconditioner. Compared to classical algorithms relying on a global sparse matrix, matrix-free solution strategies significantly…
Here we consider the factorized sparse approximate inverse (FSAI) preconditioner. We apply the FSAI preconditioner to singular irreducible M-matrices. These matrices arise e.g. in discrete Markov chain modeling or as graph Laplacians. We…
For the nonsymmetric saddle point problems with nonsymmetric positive definite (1,1) parts, the modified generalized shift-splitting (MGSSP) preconditioner as well as the MGSSP iteration method are derived in this paper, which generalize…
We introduce a general technique to construct tight fusion frames with prescribed symmetries. Applying this technique with a prescription for "all the symmetries", we construct a new family of equi-isoclinic tight fusion frames (EITFFs),…