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The process of screening molecules for desirable properties is a key step in several applications, ranging from drug discovery to material design. During the process of drug discovery specifically, protein-ligand docking, or chemical…

Machine Learning · Computer Science 2022-11-08 Ryien Hosseini , Filippo Simini , Austin Clyde , Arvind Ramanathan

Over the last decade the relative latency of access to shared memory by multicore increased as wire resistance dominated latency and low wire density layout pushed multiport memories farther away from their ports. Various techniques were…

Hardware Architecture · Computer Science 2021-03-01 Ashish Shrivastava , Alan Gatherer , Tong Sun , Sushma Wokhlu , Alex Chandra

Implementing software security practices is a critical concern in modern software development. Industry practitioners, security tool providers, and researchers have provided standard security guidelines and sophisticated security…

Software Engineering · Computer Science 2022-05-26 Enrique Larios-Vargas , Omar Elazhary , Soroush Yousefi , Derek Lowlind , Michael L. W. Vliek , Margaret-Anne Storey

Exploitation of heap vulnerabilities has been on the rise, leading to many devastating attacks. Conventional heap patch generation is a lengthy procedure, requiring intensive manual efforts. Worse, fresh patches tend to harm system…

Cryptography and Security · Computer Science 2018-12-12 Qiang Zeng , Golam Kayas , Emil Mohammed , Lannan Luo , Xiaojiang Du , Junghwan Rhee

In this paper, we study CPU utilization time patterns of several Map-Reduce applications. After extracting running patterns of several applications, the patterns with their statistical information are saved in a reference database to be…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-01-30 Nikzad Babaii Rizvandi , Javid Taheri , Albert Y. Zomaya , Reza Moraveji

Automated code instrumentation, i.e. the insertion of measurement hooks into a target application by the compiler, is an established technique for collecting reliable, fine-grained performance data. The set of functions to instrument has to…

Performance · Computer Science 2023-03-21 Sebastian Kreutzer , Christian Iwainsky , Marta Garcia-Gasulla , Victor Lopez , Christian Bischof

In cloud computing systems slow processing nodes, often referred to as "stragglers", can significantly extend the computation time. Recent results have shown that error correction coding can be used to reduce the effect of stragglers. In…

Information Theory · Computer Science 2018-06-28 Shahrzad Kiani , Nuwan Ferdinand , Stark C. Draper

Computer networks are hard to manage. Given a set of high-level requirements (e.g., reachability, security), operators have to manually figure out the individual configuration of potentially hundreds of devices running complex distributed…

Networking and Internet Architecture · Computer Science 2017-05-31 Ahmed El-Hassany , Petar Tsankov , Laurent Vanbever , Martin Vechev

Model stealing attacks present a dilemma for public machine learning APIs. To protect financial investments, companies may be forced to withhold important information about their models that could facilitate theft, including uncertainty…

Machine Learning · Computer Science 2022-06-29 Mantas Mazeika , Bo Li , David Forsyth

Many texts, especially in chemistry and biology, describe complex processes. We focus on texts that describe a chemical reaction process and questions that ask about the process's outcome under different environmental conditions. To answer…

Computation and Language · Computer Science 2022-04-19 Gal Peretz , Kira Radinsky

Recent works have started to theoretically investigate how we can protect differentially private programs against timing attacks, by making the joint distribution the output and the runtime differentially private (JOT-DP). However, the…

Cryptography and Security · Computer Science 2025-06-10 Zachary Ratliff , Salil Vadhan

Dynamic analysis, through rehosting, is an important capability for security assessment in embedded systems software. Existing rehosting techniques aim to provide high-fidelity execution by accurately emulating hardware and peripheral…

Sparse matrix operations involve a large number of zero operands which makes most of the operations redundant. The amount of redundancy magnifies when a matrix operation repeatedly executes on sparse data. Optimizing matrix operations for…

Mathematical Software · Computer Science 2023-07-13 Barnali Basak , Uday P. Khedker , Supratim Biswas

We introduce a new dynamic analysis technique to discover invariants in separation logic for heap-manipulating programs. First, we use a debugger to obtain rich program execution traces at locations of interest on sample inputs. These…

Programming Languages · Computer Science 2019-07-02 Ton Chanh Le , Guolong Zheng , ThanhVu Nguyen

Graphs model several real-world phenomena. With the growth of unstructured and semi-structured data, parallelization of graph algorithms is inevitable. Unfortunately, due to inherent irregularity of computation, memory access, and…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-08 Nibedita Behera , Ashwina Kumar , Ebenezer Rajadurai T , Sai Nitish , Rajesh Pandian M , Rupesh Nasre

The computational power increases over the past decades havegreatly enhanced the ability to simulate chemical reactions andunderstand ever more complex transformations. Tensor contractions are the fundamental computational building block of…

Mathematical Software · Computer Science 2022-01-02 Erdal Mutlu , Ruiqin Tian , Bin Ren , Sriram Krishnamoorthy , Roberto Gioiosa , Jacques Pienaar , Gokcen Kestor

We consider the problem of generating automatic code given sample input-output pairs. We train a neural network to map from the current state and the outputs to the program's next statement. The neural network optimizes multiple tasks…

Machine Learning · Computer Science 2019-01-23 Amit Zohar , Lior Wolf

LambdaBeam is a state-of-the-art, execution-guided algorithm for program synthesis that utilizes higher-order functions, lambda functions, and iterative loops within a Domain-Specific Language (DSL). LambdaBeam generates each program from…

Software Engineering · Computer Science 2024-09-13 Janis Zenkner , Lukas Dierkes , Tobias Sesterhenn , Chrisitan Bartelt

The rapid growth of deep learning models has increased the demand for efficient distributed training strategies. Fully sharded approaches like ZeRO-3 and FSDP partition model parameters across GPUs and apply optimizations such as…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-20 Masahiro Tanaka , Du Li , Umesh Chand , Ali Zafar , Haiying Shen , Olatunji Ruwase

Containerization allows developers to define the execution environment in which their software needs to be installed. Docker is the leading platform in this field, and developers that use it are required to write a Dockerfile for their…

Software Engineering · Computer Science 2023-03-29 Giovanni Rosa , Antonio Mastropaolo , Simone Scalabrino , Gabriele Bavota , Rocco Oliveto
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