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A pair of ecological tables is made of one table containing environmental variables (in columns) and another table containing species data (in columns). The rows of these two tables are identical and correspond to the sites where…

Applications · Statistics 2012-02-27 Jean Thioulouse

Prior specifications for hyperparameters of random fields in Bayesian spatial point process modelling can have a major impact on the statistical inference and the conclusions made. We consider fitting of log-Gaussian Cox processes to…

Methodology · Statistics 2017-09-21 Sigrunn H. Sørbye , Janine B. Illian , Daniel P. Simpson , David Burslem

Climate changes may affect ecosystems destabilising relationships among species. We investigate the spatial rock-paper-scissors models with a regional unevenness that reduces the selection capacity of organisms of one species. Our results…

Populations and Evolution · Quantitative Biology 2023-06-06 J. Menezes , M. Tenorio

In this paper we develop a deforestation detection pipeline that incorporates optical and Synthetic Aperture Radar (SAR) data. A crucial component of the pipeline is the construction of anomaly maps of the optical data, which is done using…

The root is an important organ of a plant since it is responsible for water and nutrient uptake. Analyzing and modelling variabilities in the geometry and topology of roots can help in assessing the plant's health, understanding its growth…

Graphics · Computer Science 2021-01-26 Guan Wang , Hamid Laga , Jinyuan Jia , Stanley J. Miklavcic , Anuj Srivastava

Tropical mathematics is used to establish a correspondence between certain microscopic and macroscopic objects in statistical models. Tropical algebra gives a common framework for macrosystems (subsets) and their elementary constituents…

Mathematical Physics · Physics 2021-06-01 Mario Angelelli

The enormous size and complexity of genotypic sequence space frequently requires consideration of coarse-grained sequences in empirical models. We develop scaling relations to quantify the effect of this coarse-graining on properties of…

Populations and Evolution · Quantitative Biology 2015-06-01 Michael Manhart , Alexandre V. Morozov

In order to demonstrate why it is important to correctly account for the (serial dependent) structure of temporal data, we document an apparently spectacular relationship between population size and lexical diversity: for five out of seven…

Computation and Language · Computer Science 2016-04-27 Alexander Koplenig , Carolin Mueller-Spitzer

The Neighbor-Joining algorithm is a popular distance-based phylogenetic method that computes a tree metric from a dissimilarity map arising from biological data. Realizing dissimilarity maps as points in Euclidean space, the algorithm…

Combinatorics · Mathematics 2020-09-18 Ruth Davidson , Abraham Martin del Campo

There are at least two kinds of similarity. Relational similarity is correspondence between relations, in contrast with attributional similarity, which is correspondence between attributes. When two words have a high degree of attributional…

Computation and Language · Computer Science 2020-08-20 Peter D. Turney

We employ the Bayesian framework to define a cointegration measure aimed to represent long term relationships between time series. For visualization of these relationships we introduce a dissimilarity matrix and a map based on the Sorting…

Physics and Society · Physics 2009-11-13 Renato Vicente , Carlos de B. Pereira , Vitor B. P. Leite , Nestor Caticha

Networks having the geometry and the connectivity of trees are considered as the spatial support of spatiotemporal dynamical processes. A tree is characterized by two parameters: its ramification and its depth. The local dynamics at the…

Pattern Formation and Solitons · Physics 2009-11-07 M. G. Cosenza , K. Tucci

Ecological studies involving counts of abundance, presence-absence or occupancy rates often produce data having a substantial proportion of zeros. Furthermore, these types of processes are typically multivariate and only adequately…

Methodology · Statistics 2011-05-17 Ali Arab , Scott H. Holan , Christopher K. Wikle , Mark L. Wildhaber

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

Extremely large aperture arrays (ELAAs) can offer massive spatial multiplexing gains in the radiative near-field region in beyond 5G systems. While near-field channel modeling for uniform linear arrays has been extensively explored in the…

Signal Processing · Electrical Eng. & Systems 2024-10-01 Özlem Tuğfe Demir , Alva Kosasih , Emil Björnson

Despite the common misconception of nearly static organisms, plants do interact continuously with the environment and with each other. It is fair to assume that during their evolution they developed particular features to overcome problems…

Populations and Evolution · Quantitative Biology 2016-02-19 Gianna Vivaldo , Elisa Masi , Camilla Pandolfi , Stefano Mancuso , Guido Caldarelli

Ecologists often interpret variation in the spatial distribution of populations in terms of responses to environmental features, but disentangling the effects of individual variables can be difficult if latent effects and spatial and…

Applications · Statistics 2015-05-19 Alexandra M. Schmidt , Marco A. Rodríguez , Estelina S. Capistrano

We use a density functional approach to calculate the contact angle of the water model on a heterogeneous, graphite-like surface. The surface heterogeneity results from the pre-adsorption of a layer of spherical species. The pre-adsorbed…

Soft Condensed Matter · Physics 2022-10-04 K. Dąbrowska , O. Pizio , S. Sokołowski

The influence of climate on biodiversity is an important ecological question. Various theories try to link climate change to allelic richness and therefore to predict the impact of global warming on genetic diversity. We model the…

Applications · Statistics 2008-07-17 Liliane Bel , Avner Bar-Hen , Rachid Cheddadi , Rémy Petit

We study the spatial patterns formed by a system of interacting particles where the mobility of any individual is determined by the population crowding at two different spatial scales. In this way we model the behavior of some biological…

Statistical Mechanics · Physics 2015-07-08 Ricardo Martínez-García , Clara Murgui , Emilio Hernández-García , Cristóbal López
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