Related papers: Complexity of modification problems for best match…
An evolutionary tree (phylogenetic tree) is a binary, rooted, unordered tree that models the evolutionary history of currently living species in which leaves are labeled by species. In this paper, we investigate the problem of finding the…
In the Minimum Consistent Subset (MCS) problem, we are presented with a connected simple undirected graph $G=(V,E)$, consisting of a vertex set $V$ of size $n$ and an edge set $E$. Each vertex in $V$ is assigned a color from the set…
The graph is one of the most widely used mathematical structures in engineering and science because of its representational power and inherent ability to demonstrate the relationship between objects. The objective of this work is to…
This paper establishes a bridge between linear logic and mainstream graph theory, building on previous work by Retor\'e (2003). We show that the problem of correctness for MLL+Mix proof nets is equivalent to the problem of uniqueness of a…
A graph $G$ is a \emph{max point-tolerance (MPT)} graph if each vertex $v$ of $G$ can be mapped to a \emph{pointed-interval} $(I_v, p_v)$ where $I_v$ is an interval of $\mathbb{R}$ and $p_v \in I_v$ such that $uv$ is an edge of $G$ iff $I_u…
The (Perfect) Matching Cut problem is to decide if a connected graph has a (perfect) matching that is also an edge cut. The Disconnected Perfect Matching problem is to decide if a connected graph has a perfect matching that contains a…
Let $G=(V,E)$ be a vertex-colored graph, where $C$ is the set of colors used to color $V$. The Graph Motif (or GM) problem takes as input $G$, a multiset $M$ of colors built from $C$, and asks whether there is a subset $S\subseteq V$ such…
The (Perfect) Matching Cut problem is to decide if a graph $G$ has a (perfect) matching cut, i.e., a (perfect) matching that is also an edge cut of $G$. Both Matching Cut and Perfect Matching Cut are known to be NP-complete. A perfect…
Probabilistic graphical models (PGMs) are powerful tools for solving systems of complex relationships over a variety of probability distributions. However, while tree-structured PGMs always result in efficient and exact solutions, inference…
Pedigree graphs, or family trees, are typically constructed by an expensive process of examining genealogical records to determine which pairs of individuals are parent and child. New methods to automate this process take as input genetic…
We consider the problem of minimizing the makespan on batch processing identical machines, subject to compatibility constraints, where two jobs are compatible if they can be processed simultaneously in a same batch. These constraints are…
A matching cut in a graph G is an edge cut of G that is also a matching. This short survey gives an overview of old and new results and open problems for Maximum Matching Cut, which is to determine the size of a largest matching cut in a…
Graph generative models are a highly active branch of machine learning. Given the steady development of new models of ever-increasing complexity, it is necessary to provide a principled way to evaluate and compare them. In this paper, we…
The evolution of gene regulatory networks in variable environments poses Multi-objective Optimization Problem (MOP), where the expression levels of genes must be tuned to meet the demands of each environment. When formalized in the context…
In the Maximum-size Properly Colored Forest problem, we are given an edge-colored undirected graph and the goal is to find a properly colored forest with as many edges as possible. We study this problem within a broader framework by…
The graph matching optimization problem is an essential component for many tasks in computer vision, such as bringing two deformable objects in correspondence. Naturally, a wide range of applicable algorithms have been proposed in the last…
An instance of the graph-constrained max-cut (GCMC) problem consists of (i) an undirected graph G and (ii) edge-weights on a complete undirected graph on the same vertex set. The objective is to find a subset of vertices satisfying some…
Finding optimal matchings in dense graphs is of general interest and of particular importance in social, transportation and biological networks. While developing optimal solutions for various matching problems is important, the running…
Past studies on the local limit of maximal weight matchings in edge-weighted large random graphs rely fundamentally on the assumption that the weights are atomless, which ensures that the maximal weight matching is unique. This excludes de…
A $b$-coloring of a graph is a proper vertex coloring such that each color class contains a vertex that sees all other colors in its neighborhood. The $b$-coloring problem, in which the task is to decide whether a graph admits a…