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Networks are useful for describing systems of interacting objects, where the nodes represent the objects and the edges represent the interactions between them. The applications include chemical and metabolic systems, food webs as well as…

Computational Physics · Physics 2009-10-20 Baruch Barzel , Ofer Biham

We present measures, models and link prediction algorithms based on the structural balance in signed social networks. Certain social networks contain, in addition to the usual 'friend' links, 'enemy' links. These networks are called signed…

Social and Information Networks · Computer Science 2014-02-28 Jérôme Kunegis

The task of inferring the missing links in a graph based on its current structure is referred to as link prediction. Link prediction methods that are based on pairwise node similarity are well-established approaches in the literature. They…

Social and Information Networks · Computer Science 2020-08-21 Md Kamrul Islam , Sabeur Aridhi , Malika Smail-Tabbone

We present a probabilistic framework for overlapping community discovery and link prediction for relational data, given as a graph. The proposed framework has: (1) a deep architecture which enables us to infer multiple layers of latent…

Machine Learning · Statistics 2017-06-19 Changwei Hu , Piyush Rai , Lawrence Carin

A machine learning (ML) feature network is a graph that connects ML features in learning tasks based on their similarity. This network representation allows us to view feature vectors as functions on the network. By leveraging function…

Machine Learning · Statistics 2024-01-11 Xinying Mu , Mark Kon

Recently, graph neural networks (GNNs) have proved to be suitable in tasks on unstructured data. Particularly in tasks as community detection, node classification, and link prediction. However, most GNN models still operate with static…

Machine Learning · Computer Science 2019-06-07 Darwin Saire Pilco , Adín Ramírez Rivera

Current research has found that some deep neural networks exhibit strong hierarchical self-similarity in feature representation or parameter distribution. However, aside from preliminary studies on how the power-law distribution of weights…

Machine Learning · Computer Science 2025-07-25 Jingyi Ding , Chengwen Qi , Hongfei Wang , Jianshe Wu , Licheng Jiao , Yuwei Guo , Jian Gao

Neural networks in many varieties are touted as very powerful machine learning tools because of their ability to distill large amounts of information from different forms of data, extracting complex features and enabling powerful…

Machine Learning · Computer Science 2018-06-13 Stephen Notley , Malik Magdon-Ismail

We present a machine learning framework and a new test bed for data mining from the Slurm Workload Manager for high-performance computing (HPC) clusters. The focus was to find a method for selecting features to support decisions: helping…

Machine Learning · Computer Science 2020-12-16 Adedolapo Okanlawon , Huichen Yang , Avishek Bose , William Hsu , Dan Andresen , Mohammed Tanash

Link prediction aims to predict the potential existence of links between two unconnected nodes within a network based on the known topological characteristics. Evaluation metrics are used to assess the effectiveness of algorithms in link…

Social and Information Networks · Computer Science 2024-01-09 Xinshan Jiao , Shuyan Wan , Qian Liu , Yilin Bi , Yan-Li Lee , En Xu , Dong Hao , Tao Zhou

Networks are models representing relationships between entities. Often these relationships are explicitly given, or we must learn a representation which generalizes and predicts observed behavior in underlying individual data (e.g.…

Social and Information Networks · Computer Science 2017-09-19 Ivan Brugere , Chris Kanich , Tanya Y. Berger-Wolf

Link prediction has become a critical problem in network science and has thus attracted increasing research interest. Popularity and similarity are two primary mechanisms in the formation of real networks. However, the roles of popularity…

Social and Information Networks · Computer Science 2024-10-08 Yong-Jian He , Yijun Ran , Zengru Di , Tao Zhou , Xiao-Ke Xu

We propose a method for gene expression based analysis of cancer phenotypes incorporating network biology knowledge through unsupervised construction of computational graphs. The structural construction of the computational graphs is driven…

Molecular Networks · Quantitative Biology 2020-10-02 Paul Scherer , Maja Trȩbacz , Nikola Simidjievski , Zohreh Shams , Helena Andres Terre , Pietro Liò , Mateja Jamnik

Link prediction and node classification are two important downstream tasks of network representation learning. Existing methods have achieved acceptable results but they perform these two tasks separately, which requires a lot of…

Social and Information Networks · Computer Science 2021-03-04 Hong Huang , Yu Song , Yao Wu , Jia Shi , Xia Xie , Hai Jin

Attempting to fully exploit the rich information of topological structure and node features for attributed graph, we introduce self-supervised learning mechanism to graph representation learning and propose a novel Self-supervised Consensus…

Social and Information Networks · Computer Science 2021-08-12 Changshu Liu , Liangjian Wen , Zhao Kang , Guangchun Luo , Ling Tian

Understanding the dependence and interplay between architecture and function in biological networks has great relevance to disease progression, biological fabrication and biological systems in general. We propose methods to assess the…

Quantitative Methods · Quantitative Biology 2009-10-17 Soumen Roy , Vladimir Filkov

Protein contacts provide key information for the understanding of protein structure and function, and therefore contact prediction from sequences is an important problem. Recent research shows that some correctly predicted long-range…

Quantitative Methods · Quantitative Biology 2020-09-02 Siqi Sun

Link prediction systems (e.g. recommender systems) typically use graph topology as one of their main sources of information. However, automorphisms and related properties of graphs beget inherent limits in predictability. We calculate hard…

Social and Information Networks · Computer Science 2023-06-28 Justus I. Hibshman , Tim Weninger

Multi-scale biomedical knowledge networks are expanding with emerging experimental technologies that generates multi-scale biomedical big data. Link prediction is increasingly used especially in bipartite biomedical networks to identify…

Social and Information Networks · Computer Science 2022-02-25 Jinjiang Guo , Jie Li , Dawei Leng , Lurong Pan

Data-driven analysis of large social networks has attracted a great deal of research interest. In this paper, we investigate 120 real social networks and their measurement-calibrated synthetic counterparts generated by four well-known…

Social and Information Networks · Computer Science 2019-08-23 Marcell Nagy , Roland Molontay