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The extraction of labels from radiology text reports enables large-scale training of medical imaging models. Existing approaches to report labeling typically rely either on sophisticated feature engineering based on medical domain knowledge…

Computation and Language · Computer Science 2020-10-20 Akshay Smit , Saahil Jain , Pranav Rajpurkar , Anuj Pareek , Andrew Y. Ng , Matthew P. Lungren

Radiologists are in short supply globally, and deep learning models offer a promising solution to address this shortage as part of clinical decision-support systems. However, training such models often requires expensive and time-consuming…

Computation and Language · Computer Science 2023-07-10 Alessandro Wollek , Philip Haitzer , Thomas Sedlmeyr , Sardi Hyska , Johannes Rueckel , Bastian Sabel , Michael Ingrisch , Tobias Lasser

Large, labeled datasets have driven deep learning methods to achieve expert-level performance on a variety of medical imaging tasks. We present CheXpert, a large dataset that contains 224,316 chest radiographs of 65,240 patients. We design…

Free-text radiology reports present a rich data source for various medical tasks, but effectively labeling these texts remains challenging. Traditional rule-based labeling methods fall short of capturing the nuances of diverse free-text…

Computation and Language · Computer Science 2024-11-07 Jawook Gu , Kihyun You , Han-Cheol Cho , Jiho Kim , Eun Kyoung Hong , Byungseok Roh

Although deep learning models for chest X-ray interpretation are commonly trained on labels generated by automatic radiology report labelers, the impact of improvements in report labeling on the performance of chest X-ray classification…

Image and Video Processing · Electrical Eng. & Systems 2021-11-30 Saahil Jain , Akshay Smit , Andrew Y. Ng , Pranav Rajpurkar

This study aimed to develop an algorithm to automatically extract annotations for chest X-ray classification models from German thoracic radiology reports. An automatic label extraction model was designed based on the CheXpert architecture,…

Computation and Language · Computer Science 2023-06-06 Alessandro Wollek , Sardi Hyska , Thomas Sedlmeyr , Philip Haitzer , Johannes Rueckel , Bastian O. Sabel , Michael Ingrisch , Tobias Lasser

Automatic extraction of medical conditions from free-text radiology reports is critical for supervising computer vision models to interpret medical images. In this work, we show that radiologists labeling reports significantly disagree with…

Image and Video Processing · Electrical Eng. & Systems 2021-03-16 Saahil Jain , Akshay Smit , Steven QH Truong , Chanh DT Nguyen , Minh-Thanh Huynh , Mudit Jain , Victoria A. Young , Andrew Y. Ng , Matthew P. Lungren , Pranav Rajpurkar

In the field of medical image analysis, the scarcity of Chinese chest X-ray report datasets has hindered the development of technology for generating Chinese chest X-ray reports. On one hand, the construction of a Chinese chest X-ray report…

Machine Learning · Computer Science 2024-04-29 Mengwei Wang , Ruixin Yan , Zeyi Hou , Ning Lang , Xiuzhuang Zhou

Billions of X-ray images are taken worldwide each year. Machine learning, and deep learning in particular, has shown potential to help radiologists triage and diagnose images. However, deep learning requires large datasets with reliable…

Image and Video Processing · Electrical Eng. & Systems 2021-05-10 Christian Garbin , Pranav Rajpurkar , Jeremy Irvin , Matthew P. Lungren , Oge Marques

Deep Convolutional Neural Networks have consistently proven to achieve state-of-the-art results on a lot of imaging tasks over the past years' majority of which comprise of high-quality data. However, it is important to work on…

Computer Vision and Pattern Recognition · Computer Science 2025-04-15 Snigdha Agarwal , Neelam Sinha

General-purpose clinical natural language processing (NLP) tools are increasingly used for the automatic labeling of clinical reports. However, independent evaluations for specific tasks, such as pediatric chest radiograph (CXR) report…

Computation and Language · Computer Science 2025-05-30 Shruti Hegde , Mabon Manoj Ninan , Jonathan R. Dillman , Shireen Hayatghaibi , Lynn Babcock , Elanchezhian Somasundaram

Automated labeling of chest X-ray reports is essential for enabling downstream tasks such as training image-based diagnostic models, population health studies, and clinical decision support. However, the high variability, complexity, and…

Computation and Language · Computer Science 2025-05-06 Brian Wong , Kaito Tanaka

Modern deep learning implementations for medical imaging usually rely on large labeled datasets. These datasets are often difficult to obtain due to privacy concerns, high costs, and even scarcity of cases. In this paper, a label-efficient…

Image and Video Processing · Electrical Eng. & Systems 2025-07-11 Heet Nitinkumar Dalsania

Medical image segmentation models are typically supervised by expert annotations at the pixel-level, which can be expensive to acquire. In this work, we propose a method that combines the high quality of pixel-level expert annotations with…

Computer Vision and Pattern Recognition · Computer Science 2021-05-18 Soham Gadgil , Mark Endo , Emily Wen , Andrew Y. Ng , Pranav Rajpurkar

Bootstrapping labels from radiology reports has become the scalable alternative to provide inexpensive ground truth for medical imaging. Because of the domain specific nature, state-of-the-art report labeling tools are predominantly…

Computation and Language · Computer Science 2019-10-03 Tobi Olatunji , Li Yao

Machine learning systems have received much attention recently for their ability to achieve expert-level performance on clinical tasks, particularly in medical imaging. Here, we examine the extent to which state-of-the-art deep learning…

Computer Vision and Pattern Recognition · Computer Science 2020-10-19 Laleh Seyyed-Kalantari , Guanxiong Liu , Matthew McDermott , Irene Y. Chen , Marzyeh Ghassemi

Recent advances in zero-shot learning have enabled the use of paired image-text data to replace structured labels, replacing the need for expert annotated datasets. Models such as CLIP-based CheXzero utilize these advancements in the domain…

Medical Physics · Physics 2023-06-16 Aakash Mishra , Rajat Mittal , Christy Jestin , Kostas Tingos , Pranav Rajpurkar

Active learning strives to reduce annotation costs by choosing the most critical examples to label. Typically, the active learning strategy is contingent on the classification model. For instance, uncertainty sampling depends on poorly…

Computation and Language · Computer Science 2020-10-26 Michelle Yuan , Hsuan-Tien Lin , Jordan Boyd-Graber

Active learning is an important technique for low-resource sequence labeling tasks. However, current active sequence labeling methods use the queried samples alone in each iteration, which is an inefficient way of leveraging human…

Computation and Language · Computer Science 2020-10-07 Rongzhi Zhang , Yue Yu , Chao Zhang

Since the release of the original CheXpert paper five years ago, CheXpert has become one of the most widely used and cited clinical AI datasets. The emergence of vision language models has sparked an increase in demands for sharing reports…

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