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Transformers are widely used in natural language processing, where they consistently achieve state-of-the-art performance. This is mainly due to their attention-based architecture, which allows them to model rich linguistic relations…

Computation and Language · Computer Science 2022-11-29 Nikolaos Mylonas , Ioannis Mollas , Grigorios Tsoumakas

Most state-of-the-art techniques for Language Models (LMs) today rely on transformer-based architectures and their ubiquitous attention mechanism. However, the exponential growth in computational requirements with longer input sequences…

Computation and Language · Computer Science 2024-11-26 Kaustubh Ponkshe , Venkatapathy Subramanian , Natwar Modani , Ganesh Ramakrishnan

Although researchers' attention is more focused on the performance of Transformer models, the interpretation of Transformer can never be ignored. Gradient is widely utilized in Transformer interpretation. From the perspective of attention…

Artificial Intelligence · Computer Science 2026-05-13 Yongjin Cui , Xiaohui Fan , Huajun Chen

Less than 1% of protein sequences are structurally and functionally annotated. Natural Language Processing (NLP) community has recently embraced self-supervised learning as a powerful approach to learn representations from unlabeled text,…

Biomolecules · Quantitative Biology 2020-12-08 Modestas Filipavicius , Matteo Manica , Joris Cadow , Maria Rodriguez Martinez

Image classification models have achieved satisfactory performance on many datasets, sometimes even better than human. However, The model attention is unclear since the lack of interpretability. This paper investigates the fidelity and…

Computer Vision and Pattern Recognition · Computer Science 2020-09-30 Wenjia Xu , Jiuniu Wang , Yang Wang , Guangluan Xu , Wei Dai , Yirong Wu

As protein informatics advances rapidly, the demand for enhanced predictive accuracy, structural analysis, and functional understanding has intensified. Transformer models, as powerful deep learning architectures, have demonstrated…

Machine Learning · Computer Science 2025-05-28 Xiaowen Ling , Zhiqiang Li , Yanbin Wang , Zhuhong You

The ability to model intra-modal and inter-modal interactions is fundamental in multimodal machine learning. The current state-of-the-art models usually adopt deep learning models with fixed structures. They can achieve exceptional…

Computer Vision and Pattern Recognition · Computer Science 2023-06-27 Qingpei Guo , Kaisheng Yao , Wei Chu

Recent advances in Language Models have enabled the protein modeling community with a powerful tool since protein sequences can be represented as text. Specifically, by taking advantage of Transformers, sequence-to-property prediction will…

Biomolecules · Quantitative Biology 2023-09-07 Chakradhar Guntuboina , Adrita Das , Parisa Mollaei , Seongwon Kim , Amir Barati Farimani

The usage of transformers has grown from learning about language semantics to forming meaningful visiolinguistic representations. These architectures are often over-parametrized, requiring large amounts of computation. In this work, we…

Computation and Language · Computer Science 2020-07-09 Prajjwal Bhargava

Since the popularization of the Transformer as a general-purpose feature encoder for NLP, many studies have attempted to decode linguistic structure from its novel multi-head attention mechanism. However, much of such work focused almost…

Computation and Language · Computer Science 2021-01-27 Vinit Ravishankar , Artur Kulmizev , Mostafa Abdou , Anders Søgaard , Joakim Nivre

Attention mechanisms and Transformer architectures have revolutionized Natural Language Processing (NLP) by enabling exceptional modeling of long-range dependencies and capturing intricate linguistic patterns. However, their inherent…

Machine Learning · Computer Science 2024-09-19 Anna-Maria Halacheva , Mojtaba Nayyeri , Steffen Staab

Attention is fundamental to cognition, yet it remains a challenge to understand attention in tasks approaching real-world complexity. Here, we approached this problem by modeling gaze patterns of monkeys playing Pac-Man. We first show a…

Neurons and Cognition · Quantitative Biology 2025-08-12 Zhongqiao Lin , Yunwei Li , Tianming Yang

Transformer models are revolutionizing machine learning, but their inner workings remain mysterious. In this work, we present a new visualization technique designed to help researchers understand the self-attention mechanism in transformers…

Human-Computer Interaction · Computer Science 2023-08-10 Catherine Yeh , Yida Chen , Aoyu Wu , Cynthia Chen , Fernanda Viégas , Martin Wattenberg

Transformer is a ubiquitous model for natural language processing and has attracted wide attentions in computer vision. The attention maps are indispensable for a transformer model to encode the dependencies among input tokens. However,…

Machine Learning · Computer Science 2021-02-26 Yujing Wang , Yaming Yang , Jiangang Bai , Mingliang Zhang , Jing Bai , Jing Yu , Ce Zhang , Gao Huang , Yunhai Tong

Transformer has significantly propelled the development of artificial intelligence, and certainly the development of agents as well. We categorize attention structures of Transformer into two types based on the source of the input…

Computer Vision and Pattern Recognition · Computer Science 2026-05-28 Yongjin Cui , Xiaohui Fan , Huajun Chen

Benefiting from the capability of building inter-dependencies among channels or spatial locations, attention mechanisms have been extensively studied and broadly used in a variety of computer vision tasks recently. In this paper, we…

Computer Vision and Pattern Recognition · Computer Science 2020-11-09 Diganta Misra , Trikay Nalamada , Ajay Uppili Arasanipalai , Qibin Hou

Attention is a cornerstone of human cognition that facilitates the efficient extraction of information in everyday life. Recent developments in artificial intelligence like the Transformer architecture also incorporate the idea of attention…

Other Quantitative Biology · Quantitative Biology 2024-07-03 Minglu Zhao , Dehong Xu , Tao Gao

Attention based language models have become a critical component in state-of-the-art natural language processing systems. However, these models have significant computational requirements, due to long training times, dense operations and…

Computation and Language · Computer Science 2021-06-11 Ivan Chelombiev , Daniel Justus , Douglas Orr , Anastasia Dietrich , Frithjof Gressmann , Alexandros Koliousis , Carlo Luschi

An attention matrix of a transformer self-attention sublayer can provably be decomposed into two components and only one of them (effective attention) contributes to the model output. This leads us to ask whether visualizing effective…

Computation and Language · Computer Science 2021-05-20 Kaiser Sun , Ana Marasović

Transformer-based models consist of interleaved feed-forward blocks - that capture content meaning, and relatively more expensive self-attention blocks - that capture context meaning. In this paper, we explored trade-offs and ordering of…

Machine Learning · Computer Science 2021-05-18 Swetha Mandava , Szymon Migacz , Alex Fit Florea