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Although reproducibility is a core tenet of the scientific method, it remains challenging to reproduce many results. Surprisingly, this also holds true for computational results in domains such as systems biology where there have been…

Quantitative Methods · Quantitative Biology 2021-04-13 Michael L. Blinov , John H. Gennari , Jonathan R. Karr , Ion I. Moraru , David P. Nickerson , Herbert M. Sauro

Most machine learning models require many iterations of hyper-parameter tuning, feature engineering, and debugging to produce effective results. As machine learning models become more complicated, this pipeline becomes more difficult to…

Machine Learning · Computer Science 2024-08-26 Mirabel Reid , Christine Sweeney , Oleg Korobkin

Many research directions in machine learning, particularly in deep learning, involve complex, multi-stage experiments, commonly involving state-mutating operations acting on models along multiple paths of execution. Although machine…

Software Engineering · Computer Science 2020-06-16 Michela Paganini , Jessica Zosa Forde

Machine learning (ML) is increasingly being used in high-stakes applications impacting society. Therefore, it is of critical importance that ML models do not propagate discrimination. Collecting accurate labeled data in societal…

Machine Learning · Computer Science 2021-04-01 Hadis Anahideh , Abolfazl Asudeh , Saravanan Thirumuruganathan

Production machine learning (ML) systems fail silently -- not with crashes, but through wrong decisions. While observability is recognized as critical for ML operations, there is a lack empirical evidence of what practitioners actually…

Software Engineering · Computer Science 2025-10-29 Joran Leest , Ilias Gerostathopoulos , Patricia Lago , Claudia Raibulet

Nowadays, we are witnessing a wide adoption of Machine learning (ML) models in many safety-critical systems, thanks to recent breakthroughs in deep learning and reinforcement learning. Many people are now interacting with systems based on…

Software Engineering · Computer Science 2018-12-07 Houssem Ben Braiek , Foutse Khomh

Computational reproducibility, the possibility for independent researchers to exactly reproduce published empirical results, is fundamental to science. Despite its importance, the proportion of research articles aiming for reproducibility…

A common practice of ML systems development concerns the training of the same model under different data sets, and the use of the same (training and test) sets for different learning models. The first case is a desirable practice for…

Logic in Computer Science · Computer Science 2025-06-06 Leonardo Ceragioli , Giuseppe Primiero

To benefit from the abundance of data and the insights it brings data processing pipelines are being used in many areas of research and development in both industry and academia. One approach to automating data processing pipelines is the…

Cryptography and Security · Computer Science 2023-10-18 Ludwig Stage , Dimka Karastoyanova

Understanding the life cycle of the machine learning (ML) model is an intriguing area of research (e.g., understanding where the model comes from, how it is trained, and how it is used). This paper focuses on a novel problem within this…

Machine Learning · Computer Science 2024-07-19 Xin Mu , Yu Wang , Yehong Zhang , Jiaqi Zhang , Hui Wang , Yang Xiang , Yue Yu

Natural Language Processing (NLP), a cornerstone field within artificial intelligence, has been increasingly utilized in the field of materials science literature. Our study conducts a reproducibility analysis of two pioneering works within…

Chemical Physics · Physics 2023-08-01 Xiangyun Lei , Edward Kim , Viktoriia Baibakova , Shijing Sun

Evaluating the computational reproducibility of data analysis pipelines has become a critical issue. It is, however, a cumbersome process for analyses that involve data from large populations of subjects, due to their computational and…

Methodology · Statistics 2018-09-28 Soudabeh Barghi , Lalet Scaria , Ali Salari , Tristan Glatard

Sustainability and efficiency have become essential considerations in the development and deployment of Artificial Intelligence systems, but existing regulatory practices for Green AI still lack standardized, model-agnostic evaluation…

Machine Learning · Computer Science 2026-03-19 Jorge Paz-Ruza , João Gama , Amparo Alonso-Betanzos , Bertha Guijarro-Berdiñas

Reasoning has emerged as the next major frontier for language models (LMs), with rapid advances from both academic and industrial labs. However, this progress often outpaces methodological rigor, with many evaluations relying on…

Machine Learning · Computer Science 2025-10-08 Andreas Hochlehnert , Hardik Bhatnagar , Vishaal Udandarao , Samuel Albanie , Ameya Prabhu , Matthias Bethge

Over the past decade alongside increased focus on computational reproducibility significant efforts have been made to define reproducibility. However, these definitions provide a textual description rather than a framework. The community…

Computational Engineering, Finance, and Science · Computer Science 2026-01-06 Meznah Aloqalaa , Stian Soiland-Reyes , Carole Goble

Machine Learning explainability techniques have been proposed as a means of `explaining' or interrogating a model in order to understand why a particular decision or prediction has been made. Such an ability is especially important at a…

Machine Learning · Statistics 2022-02-28 Matthew J. Vowels

Difficulties in replication and reproducibility of empirical evidences in machine learning research have become a prominent topic in recent years. Ensuring that machine learning research results are sound and reliable requires…

Machine Learning · Computer Science 2024-03-20 Tobias Hille , Maximilian Stubbemann , Tom Hanika

Context: Machine learning (ML) may enable effective automated test generation. Objective: We characterize emerging research, examining testing practices, researcher goals, ML techniques applied, evaluation, and challenges. Methods: We…

Software Engineering · Computer Science 2023-04-18 Afonso Fontes , Gregory Gay

Study reproducibility is essential to corroborate, build on, and learn from the results of scientific research but is notoriously challenging in bioinformatics, which often involves large data sets and complex analytic workflows involving…

Quantitative Methods · Quantitative Biology 2023-05-22 Christopher R. Keefe , Matthew R. Dillon , Chloe Herman , Mary Jewell , Colin V. Wood , Evan Bolyen , J. Gregory Caporaso

Replicability and reproducibility of experimental results are primary concerns in all the areas of science and IR is not an exception. Besides the problem of moving the field towards more reproducible experimental practices and protocols,…

Information Retrieval · Computer Science 2020-10-27 Timo Breuer , Nicola Ferro , Norbert Fuhr , Maria Maistro , Tetsuya Sakai , Philipp Schaer , Ian Soboroff