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The massive scale and growth of textual biomedical data have made its indexing and classification increasingly important. However, existing research on this topic mainly utilized convolutional and recurrent neural networks, which generally…

Computation and Language · Computer Science 2022-03-08 Bruce Nguyen , Shaoxiong Ji

Fine-tuned Bidirectional Encoder Representations from Transformers (BERT)-based sequence classification models have proven to be effective for detecting Alzheimer's Disease (AD) from transcripts of human speech. However, previous research…

Computation and Language · Computer Science 2020-11-13 Aparna Balagopalan , Jekaterina Novikova

In recent years BERT shows apparent advantages and great potential in natural language processing tasks. However, both training and applying BERT requires intensive time and resources for computing contextual language representations, which…

Computation and Language · Computer Science 2021-11-05 Tan Huang

Biomedical literature is a rapidly expanding field of science and technology. Classification of biomedical texts is an essential part of biomedicine research, especially in the field of biology. This work proposes the fine-tuned DistilBERT,…

Computation and Language · Computer Science 2024-04-23 Ziqing Guo

In recent years, the introduction of the Transformer models sparked a revolution in natural language processing (NLP). BERT was one of the first text encoders using only the attention mechanism without any recurrent parts to achieve…

Computation and Language · Computer Science 2022-07-01 Ilan Perez , Raphael Reinauer

The Bidirectional Encoder Representations from Transformers (BERT) model has been radically improving the performance of many Natural Language Processing (NLP) tasks such as Text Classification and Named Entity Recognition (NER)…

Computation and Language · Computer Science 2021-08-24 Leonard Dahlmann , Tomer Lancewicki

We present BlockBERT, a lightweight and efficient BERT model for better modeling long-distance dependencies. Our model extends BERT by introducing sparse block structures into the attention matrix to reduce both memory consumption and…

Computation and Language · Computer Science 2020-11-03 Jiezhong Qiu , Hao Ma , Omer Levy , Scott Wen-tau Yih , Sinong Wang , Jie Tang

Machine based text comprehension has always been a significant research field in natural language processing. Once a full understanding of the text context and semantics is achieved, a deep learning model can be trained to solve a large…

Computation and Language · Computer Science 2020-09-03 Omar Mossad , Amgad Ahmed , Anandharaju Raju , Hari Karthikeyan , Zayed Ahmed

This paper conducts a comprehensive investigation into applying large language models, particularly on BioBERT, in healthcare. It begins with thoroughly examining previous natural language processing (NLP) approaches in healthcare, shedding…

Artificial Intelligence · Computer Science 2023-10-13 Shyni Sharaf , V. S. Anoop

Models based on BERT have been extremely successful in solving a variety of natural language processing (NLP) tasks. Unfortunately, many of these large models require a great deal of computational resources and/or time for pre-training and…

Computation and Language · Computer Science 2022-02-28 Sharath Nittur Sridhar , Anthony Sarah , Sairam Sundaresan

In this paper, we propose Stacked DeBERT, short for Stacked Denoising Bidirectional Encoder Representations from Transformers. This novel model improves robustness in incomplete data, when compared to existing systems, by designing a novel…

Computation and Language · Computer Science 2021-01-15 Gwenaelle Cunha Sergio , Minho Lee

Online patient inquiries are often informal, incomplete, and written before professional assessment, yet they must still be routed to an appropriate level of clinical follow-up. We study this as a four-class actionable triage task --…

Computation and Language · Computer Science 2026-05-18 Liqi Zhou , Jiafu Li

We investigate the self-attention mechanism of BERT in a fine-tuning scenario for the classification of scientific articles over a taxonomy of research disciplines. We observe how self-attention focuses on words that are highly related to…

Computation and Language · Computer Science 2021-01-21 Andres Garcia-Silva , Jose Manuel Gomez-Perez

Deep learning (DL) based predictive models from electronic health records (EHR) deliver impressive performance in many clinical tasks. Large training cohorts, however, are often required to achieve high accuracy, hindering the adoption of…

Computation and Language · Computer Science 2020-05-27 Laila Rasmy , Yang Xiang , Ziqian Xie , Cui Tao , Degui Zhi

Efficient text classification is essential for handling the increasing volume of academic publications. This study explores the use of pre-trained language models (PLMs), including BERT, SciBERT, BioBERT, and BlueBERT, fine-tuned on the Web…

Computation and Language · Computer Science 2025-09-09 Zhyar Rzgar K Rostam , Gábor Kertész

Text classification problem is a very broad field of study in the field of natural language processing. In short, the text classification problem is to determine which of the previously determined classes the given text belongs to.…

Computation and Language · Computer Science 2021-12-28 D. Emre Taşar , Şükrü Ozan , M. Fatih Akca , Oğuzhan Ölmez , Semih Gülüm , Seçilay Kutal , Ceren Belhan

Electronic Health Records are large repositories of valuable clinical data, with a significant portion stored in unstructured text format. This textual data includes clinical events (e.g., disorders, symptoms, findings, medications and…

Computation and Language · Computer Science 2024-09-02 Shubham Agarwal , Thomas Searle , Mart Ratas , Anthony Shek , James Teo , Richard Dobson

Semantic parsing is the task of transforming sentences from natural language into formal representations of predicate-argument structures. Under this research area, frame-semantic parsing has attracted much interest. This parsing approach…

Computation and Language · Computer Science 2019-11-01 Sang-Sang Tan , Jin-Cheon Na

This paper presents a novel approach to accurately classify the hallmarks of cancer, which is a crucial task in cancer research. Our proposed method utilizes the Bidirectional Encoder Representations from Transformers (BERT) architecture,…

Computation and Language · Computer Science 2023-06-08 Sultan Zavrak , Seyhmus Yilmaz

Recent developments in online communication and their usage in everyday life have caused an explosion in the amount of a new genre of text data, short text. Thus, the need to classify this type of text based on its content has a significant…

Computation and Language · Computer Science 2024-09-10 Bruno D. Ferreira-Saraiva , Zuil Pirola , João P. Matos-Carvalho , Manuel Marques-Pita