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Background: Worldwide demand for SARS-CoV-2 RT-PCR testing is increasing as more countries are impacted by COVID-19 and as testing remains central to contain the spread of the disease, both in countries where the disease is emerging and in…

Quantitative Methods · Quantitative Biology 2020-06-05 Alexandra Martin , Alexandre Storto , Barbara Andre , Allison Mallory , Remi Dangla , Benoit Visseaux , Olivier Gossner

Within the likes of any highly contagious and unpredictable disease, lies a predictable and attainable growth rate that researchers can find in order to make logistical conclusions about that particular disease and its affected regions'…

Applications · Statistics 2024-02-05 Julian Bennett , Lauren Eriksen , Xingjie Helen Li

The SIR-compartment model is among the simplest models that describe the spread of a disease through a population. The model makes the unrealistic assumption that the population through which the disease is spreading is well-mixed. Although…

Populations and Evolution · Quantitative Biology 2022-11-16 Ryan Wilkinson , Marcus Roper

Networks of contacts capable of spreading infectious diseases are often observed to be highly heterogeneous, with the majority of individuals having fewer contacts than the mean, and a significant minority having relatively very many…

Physics and Society · Physics 2016-12-21 César Parra-Rojas , Thomas House , Alan J. McKane

Standard epidemiological models for COVID-19 employ variants of compartment (SIR) models at local scales, implicitly assuming spatially uniform local mixing. Here, we examine the effect of employing more geographically detailed diffusion…

Compartmental transmission models have become an invaluable tool to study the dynamics of infectious diseases. The Susceptible-Infectious-Recovered (SIR) model is known to have an exact semi-analytical solution. In the current study, the…

Populations and Evolution · Quantitative Biology 2020-11-03 Kevin Heng , Christian L. Althaus

Despite many studies on the transmission mechanism of the Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), it remains still challenging to efficiently reduce mortality. In this work, we apply a two-population…

Physics and Society · Physics 2021-09-14 Long Ma , Maksim Kitsak , Piet Van Mieghem

Accurate forecasts of the number of newly infected people during an epidemic are critical for making effective timely decisions. This paper addresses this challenge using the SIMLR model, which incorporates machine learning (ML) into the…

Machine Learning · Computer Science 2021-06-04 Roberto Vega , Leonardo Flores , Russell Greiner

Several contact tracing solutions have been proposed and implemented all around the globe to combat the spread of COVID-19 pandemic. But, most of these solutions endanger the privacy rights of the individuals and hinder their widespread…

Cryptography and Security · Computer Science 2020-08-18 Priyanka Singh , Abhishek Singh , Gabriel Cojocaru , Praneeth Vepakomma , Ramesh Raskar

The COVID-19 pandemic has plagued the world for months. The U.S. has taken measures to counter it. On a daily basis, newly confirmed cases have been reported. In the early days, these numbers showed an increasing trend. Recently, the…

Physics and Society · Physics 2020-05-21 Xiubin Bruce Wang , Chaolun Ma

This paper extends the canonical model of epidemiology, the SIRD model, to allow for time-varying parameters for real-time measurement and prediction of the trajectory of the Covid-19 pandemic. Time variation in model parameters is captured…

Econometrics · Economics 2023-02-01 Cem Cakmakli , Yasin Simsek

It is widely accepted that the number of reported cases during the first stages of the COVID-19 pandemic severely underestimates the number of actual cases. We leverage delay embedding theorems of Whitney and Takens and use Gaussian Process…

Quantitative Methods · Quantitative Biology 2022-02-02 G. A. Kevrekidis , Z. Rapti , Y. Drossinos , P. G. Kevrekidis , M. A. Barmann , Q. Y. Chen , J. Cuevas-Maraver

The current global health emergency triggered by the pandemic COVID-19 is one of the greatest challenges mankind face in this generation. Computational simulations have played an important role to predict the development of the current…

Populations and Evolution · Quantitative Biology 2020-06-11 Kok Yew Ng , Meei Mei Gui

Although modeling studies are focused on the control of SIR-based systems describing epidemic data sets (particularly the COVID-19), few of them present a formal dynamic characterization in terms of equilibrium sets and stability. Such…

Optimization and Control · Mathematics 2021-06-03 A. H. González , A. L. Anderson , A. Ferramosca , E. A. Hernandez-Vargas

We propose an epidemic model SIPHERD in which three categories of infection carriers Symptomatic, Purely Asymptomatic, and Exposed are considered with different rates of transmission of infection that are taken dependent on the lockdown and…

Populations and Evolution · Quantitative Biology 2020-08-26 Ashutosh Mahajan , Ravi Solanki , A. S. Namitha

Predicting an accurate expected number of future COVID-19 cases is essential to properly evaluate the effectiveness of any treatment or preventive measure. This study aimed to identify the most appropriate mathematical model to…

Populations and Evolution · Quantitative Biology 2021-04-07 Natalia Blanco , Kristen Stafford , Marie-Claude Lavoie , Axel Brandenburg , Maria W. Gorna , Matthew Merski

The world is suffering from a pandemic called COVID-19, caused by the SARS-CoV-2 virus. National governments have problems evaluating the reach of the epidemic, due to having limited resources and tests at their disposal. This problem is…

We introduce an extended SEIR infectious disease model with data assimilation for the study of the spread of COVID-19. In this framework, undetected asymptomatic and pre-symptomatic cases are taken into account, and the impact of their…

Numerical Analysis · Mathematics 2021-11-01 Qiwen Sun , Serge Richard , Takemasa Miyoshi

COVID-19 has forced quarantine measures in several countries across the world. These measures have proven to be effective in significantly reducing the prevalence of the virus. To date, no effective treatment or vaccine is available. In the…

Populations and Evolution · Quantitative Biology 2020-12-02 Davide Faranda , Tommaso Alberti

There is growing interest in technology-enabled contact tracing, the process of identifying potentially infected COVID-19 patients by notifying all recent contacts of an infected person. Governments, technology companies, and research…

Cryptography and Security · Computer Science 2020-12-18 Lucy Simko , Ryan Calo , Franziska Roesner , Tadayoshi Kohno