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The COVID-19 pandemic has highlighted the need for quantitative modeling and analysis to understand real-world disease dynamics. In particular, post hoc analyses using compartmental models offer valuable insights into the effectiveness of…

Machine Learning · Computer Science 2025-10-09 Phillip Rothenbeck , Sai Karthikeya Vemuri , Niklas Penzel , Joachim Denzler

This document aims to estimate and describe the effects of the social distancing measures implemented in several countries with the expectancy of controlling the spread of COVID-19. The procedure relies on the classic…

Populations and Evolution · Quantitative Biology 2021-06-28 Gerardo L. Febres

Policy-makers require data-driven tools to assess the spread of COVID-19 and inform the public of their risk of infection on an ongoing basis. We propose a rigorous hybrid model-and-data-driven approach to risk scoring based on a…

Understanding the spread of COVID-19 has been the subject of numerous studies, highlighting the significance of reliable epidemic models. Here, we introduce a novel epidemic model using a latent Hawkes process with temporal covariates for…

Methodology · Statistics 2022-08-16 Stamatina Lamprinakou , Axel Gandy , Emma McCoy

In this paper, we propose a Susceptible-Infected-Removal (SIR) model with time fused coefficients. In particular, our proposed model discovers the underlying time homogeneity pattern for the SIR model's transmission rate and removal rate…

Applications · Statistics 2021-03-11 Hou-Cheng Yang , Yishu Xue , Yuqing Pan , Qingyang Liu , Guanyu Hu

In this work, we discuss the SIR epidemiological model and different variations of it applied to the propagation of the COVID-19 pandemia; we employ the data of the state of Guanajuato and of Mexico. We present some considerations that can…

Populations and Evolution · Quantitative Biology 2022-11-16 Nana Cabo Bizet , Jonanthan Hidalgo Núñez , Gil Estefano Rodrígez Rivera

In this paper, we conduct mathematical and numerical analyses to address the following crucial questions for COVID-19: (Q1) Is it possible to contain COVID-19? (Q2) When will be the peak and the end of the epidemic? (Q3) How do the…

Populations and Evolution · Quantitative Biology 2020-09-22 Yi-Cheng Chen , Ping-En Lu , Cheng-Shang Chang , Tzu-Hsuan Liu

I estimate the Susceptible-Infected-Recovered (SIR) epidemic model for Coronavirus Disease 2019 (COVID-19). The transmission rate is heterogeneous across countries and far exceeds the recovery rate, which enables a fast spread. In the…

Populations and Evolution · Quantitative Biology 2020-03-27 Alexis Akira Toda

To reduce the biases of traditional survey-based methods, this paper proposes an epidemic model-based approach to inference the incubation period distribution of COVID-19 utilizing the publicly reported confirmed case number. We construct…

Populations and Evolution · Quantitative Biology 2020-07-23 Shiyang Lai , Tianqi Zhao , Ningyuan Fan

The Susceptible-Exposed-Infectious-Recovered (SEIR) model is applied in several countries to ascertain the spread of the coronavirus disease 2019 (COVID-19). We consider discrete-time SEIR epidemic model in a closed system which does not…

Dynamical Systems · Mathematics 2021-05-04 U. A. Rozikov , S. K. Shoyimardonov

We propose a new method to estimate the time-varying effective (or instantaneous) reproduction number of the novel coronavirus disease (COVID-19). The method is based on a discrete-time stochastic augmented compartmental model that…

Quantitative Methods · Quantitative Biology 2022-04-27 A. Hasan , H. Susanto , V. R. Tjahjono , R. Kusdiantara , E. R. M. Putri , P. Hadisoemarto , N. Nuraini

In this paper, we propose a new real-time differential virus transmission model, which can give more accurate and robust short-term predictions of COVID-19 transmitted infectious disease with benefits of near-term trend projection.…

Populations and Evolution · Quantitative Biology 2020-05-05 Sheldon X. D. Tan , Liang Chen

Contact tracing and quarantine are well established non-pharmaceutical epidemic control tools. The paper aims to clarify the impact of these measures in COVID-19 epidemic. A new deterministic model is introduced (SEIRQ: susceptible,…

Populations and Evolution · Quantitative Biology 2020-06-01 Tomasz Piasecki , Piotr B. Mucha , Magdalena Rosińska

The U.S. Covid-19 data exhibit a high-frequency oscillation along a low-frequency wave for outbreaks. There is no model to account for it. A modified SIR model is proposed to explain this spiking phenomenon. It is also used to best-fit the…

Populations and Evolution · Quantitative Biology 2023-11-21 Bo Deng

Authors Yi-Cheng Chen, Ping-En Lu, Cheng-Shang Chang, and Tzu-Hsuan Liu use the Finite Impulse Response (FIR) linear system filtering method to track and predict the number of people infected and recovered from COVID-19, in a pandemic…

Machine Learning · Statistics 2025-06-30 Felipe Rogério Pimentel , Rafael Gustavo Alves

In this study, we propose a time-dependent Susceptible-Exposed-Infected-Recovered (SEIR) model for the analysis of the SARS-CoV-2 epidemic outbreak in three different countries, the United States of America, Italy and Iceland using public…

Populations and Evolution · Quantitative Biology 2021-11-08 P. Girardi , C. Gaetan

Recent outbreak of the novel coronavirus COVID-19 has affected all of our lives in one way or the other. While medical researchers are working hard to find a cure and doctors/nurses to attend the affected individuals, measures such as…

Methodology · Statistics 2020-07-23 Arkaprava Roy , Sayar Karmakar

We propose a Bayesian Heterogeneity Learning approach for Susceptible-Infected-Removal-Susceptible (SIRS) model that allows underlying clustering patterns for transmission rate, recovery rate, and loss of immunity rate for the latest…

Applications · Statistics 2020-07-17 Guanyu Hu , Junxian Geng

This paper utilizes a stochastic Susceptible-Infected-recovered (SIR) model with a non-linear incidence rate to perform a detailed mathematical study of optimal lock-down intensity and vaccination rate under the COVID-19 pandemic…

Optimization and Control · Mathematics 2022-09-29 Paramahansa Pramanik

In this paper, we continue development of the new epidemiological model HIT, which is suitable for analyzing and predicting the propagation of COVID-19 epidemics. This is a discrete-time model allowing a reconstruction of the dynamics of…

Physics and Society · Physics 2020-07-24 Yurii Nesterov