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Graph-based text representation focuses on how text documents are represented as graphs for exploiting dependency information between tokens and documents within a corpus. Despite the increasing interest in graph representation learning,…

Computation and Language · Computer Science 2022-10-13 Wenzhe Li , Nikolaos Aletras

This paper presents a novel transformer architecture for graph representation learning. The core insight of our method is to fully consider the information propagation among nodes and edges in a graph when building the attention module in…

Machine Learning · Computer Science 2024-10-10 Zhe Chen , Hao Tan , Tao Wang , Tianrun Shen , Tong Lu , Qiuying Peng , Cheng Cheng , Yue Qi

Different layouts can characterize different aspects of the same graph. Finding a "good" layout of a graph is thus an important task for graph visualization. In practice, users often visualize a graph in multiple layouts by using different…

Social and Information Networks · Computer Science 2019-10-16 Oh-Hyun Kwon , Kwan-Liu Ma

We show that standard Transformers without graph-specific modifications can lead to promising results in graph learning both in theory and practice. Given a graph, we simply treat all nodes and edges as independent tokens, augment them with…

Machine Learning · Computer Science 2022-10-25 Jinwoo Kim , Tien Dat Nguyen , Seonwoo Min , Sungjun Cho , Moontae Lee , Honglak Lee , Seunghoon Hong

As opposed to natural languages, source code understanding is influenced by grammatical relationships between tokens regardless of their identifier name. Graph representations of source code such as Abstract Syntax Tree (AST) can capture…

Machine Learning · Computer Science 2021-11-18 Junyan Cheng , Iordanis Fostiropoulos , Barry Boehm

A bare meaning representation can be expressed in various ways using natural language, depending on how the information is structured on the surface level. We are interested in finding ways to control topic-focus articulation when…

Computation and Language · Computer Science 2023-10-04 Chunliu Wang , Rik van Noord , Johan Bos

The success of a specific neural network architecture is closely tied to the dataset and task it tackles; there is no one-size-fits-all solution. Thus, considerable efforts have been made to quickly and accurately estimate the performances…

Machine Learning · Computer Science 2024-03-22 Dongyeong Hwang , Hyunju Kim , Sunwoo Kim , Kijung Shin

Autoencoders are effective deep learning models that can function as generative models and learn latent representations for downstream tasks. The use of graph autoencoders - with both encoder and decoder implemented as message passing…

Machine Learning · Computer Science 2025-03-04 Magnus Cunow , Gerrit Großmann

Graph transformers need strong inductive biases to derive meaningful attention scores. Yet, current methods often fall short in capturing longer ranges, hierarchical structures, or community structures, which are common in various graphs…

Machine Learning · Computer Science 2024-05-28 Yuankai Luo , Hongkang Li , Lei Shi , Xiao-Ming Wu

Graph Neural Networks (GNNs) have emerged as a powerful tool for learning from graph-structured data. However, even state-of-the-art architectures have limitations on what structures they can distinguish, imposing theoretical limits on what…

Machine Learning · Computer Science 2023-07-03 Eren Akbiyik , Florian Grötschla , Beni Egressy , Roger Wattenhofer

There has been a recent surge in transformer-based architectures for learning on graphs, mainly motivated by attention as an effective learning mechanism and the desire to supersede handcrafted operators characteristic of message passing…

Machine Learning · Computer Science 2025-06-10 David Buterez , Jon Paul Janet , Dino Oglic , Pietro Lio

Recently a variety of methods have been developed to encode graphs into low-dimensional vectors that can be easily exploited by machine learning algorithms. The majority of these methods start by embedding the graph nodes into a…

Machine Learning · Computer Science 2018-09-13 Yu Jin , Joseph F. JaJa

We introduce AutoGraph, a scalable autoregressive model for attributed graph generation using decoder-only transformers. By flattening graphs into random sequences of tokens through a reversible process, AutoGraph enables modeling graphs as…

Machine Learning · Computer Science 2025-12-09 Dexiong Chen , Markus Krimmel , Karsten Borgwardt

Rule mining is an effective approach for reasoning over knowledge graph (KG). Existing works mainly concentrate on mining rules. However, there might be several rules that could be applied for reasoning for one relation, and how to select…

Logic in Computer Science · Computer Science 2022-09-14 Zezhong Xu , Peng Ye , Hui Chen , Meng Zhao , Huajun Chen , Wen Zhang

Graph embedding aims to transfer a graph into vectors to facilitate subsequent graph analytics tasks like link prediction and graph clustering. Most approaches on graph embedding focus on preserving the graph structure or minimizing the…

Machine Learning · Computer Science 2020-03-04 Shirui Pan , Ruiqi Hu , Sai-fu Fung , Guodong Long , Jing Jiang , Chengqi Zhang

Graph Transformers have emerged as a powerful alternative to Message-Passing Graph Neural Networks (MP-GNNs) to address limitations such as over-squashing of information exchange. However, incorporating graph inductive bias into transformer…

Machine Learning · Computer Science 2024-04-09 Zihan Pengmei , Zimu Li

Transformer, based on the encoder-decoder framework, has achieved state-of-the-art performance on several natural language generation tasks. The encoder maps the words in the input sentence into a sequence of hidden states, which are then…

Computation and Language · Computer Science 2020-02-25 Rongxiang Weng , Haoran Wei , Shujian Huang , Heng Yu , Lidong Bing , Weihua Luo , Jiajun Chen

Recent improvements in KG-to-text generation are due to additional auxiliary pre-training tasks designed to give the fine-tune task a boost in performance. These tasks require extensive computational resources while only suggesting marginal…

Computation and Language · Computer Science 2023-05-19 Anthony Colas , Mehrdad Alvandipour , Daisy Zhe Wang

Capturing the long-range dependencies has empirically proven to be effective on a wide range of computer vision tasks. The progressive advances on this topic have been made through the employment of the transformer framework with the help…

Computer Vision and Pattern Recognition · Computer Science 2022-09-21 Dong Zhang , Jinhui Tang , Kwang-Ting Cheng

The Transformer architecture is shown to provide a powerful framework as an end-to-end model for building expression trees from online handwritten gestures corresponding to glyph strokes. In particular, the attention mechanism was…

Computation and Language · Computer Science 2022-11-07 Mirco Ramo , Guénolé C. M. Silvestre