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Large Language Models (LLMs) possess strong representation and reasoning capabilities, but their application to structure-based drug design (SBDD) is limited by insufficient understanding of protein structures and unpredictable molecular…

Machine Learning · Computer Science 2026-01-27 Xuanning Hu , Anchen Li , Qianli Xing , Jinglong Ji , Hao Tuo , Bo Yang

Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproducing published results, either experimental data or…

Molecular Networks · Quantitative Biology 2017-06-19 Kai-Wen Liang , Qinsi Wang , Cheryl Telmer , Divyaa Ravichandran , Peter Spirtes , Natasa Miskov-Zivanov

Here we present a holistic approach for data exploration on dense knowledge graphs as a novel approach with a proof-of-concept in biomedical research. Knowledge graphs are increasingly becoming a vital factor in knowledge mining and…

Artificial Intelligence · Computer Science 2019-12-16 Jens Dörpinghaus , Alexander Apke , Vanessa Lage-Rupprecht , Andreas Stefan

Context: Championed by IBM's vision of autonomic computing paper in 2003, the autonomic computing research field has seen increased research activity over the last 20 years. Several conferences and workshops have been established and have…

Software Engineering · Computer Science 2022-05-03 Terence Wong , Markus Wagner , Christoph Treude

Citation practices are crucial in shaping the structure of scientific knowledge, yet they are often influenced by contemporary norms and biases. The emergence of Large Language Models (LLMs) introduces a new dynamic to these practices.…

Digital Libraries · Computer Science 2024-08-27 Andres Algaba , Carmen Mazijn , Vincent Holst , Floriano Tori , Sylvia Wenmackers , Vincent Ginis

The increasing adoption of large language models (LLMs) has raised serious concerns about their reliability and trustworthiness. As a result, a growing body of research focuses on evidence-based text generation with LLMs, aiming to link…

Computation and Language · Computer Science 2026-04-17 Tobias Schreieder , Tim Schopf , Michael Färber

Online scientific publications provide vast opportunities for researchers. Alas, the quantity and the rate of increase in the articles make the utilization of these resources very challenging. This work presents as inquiry-based approach to…

Information Retrieval · Computer Science 2020-01-03 S. Uskudarli , E. Gökdeniz , R. Canbeyli

Large language models (LLMs) like ChatGPT can generate and revise text with human-level performance. These models come with clear limitations: they can produce inaccurate information, reinforce existing biases, and be easily misused. Yet,…

Computation and Language · Computer Science 2025-07-04 Dmitry Kobak , Rita González-Márquez , Emőke-Ágnes Horvát , Jan Lause

The rapid evolution of large language models (LLMs) has ushered in the need for comprehensive assessments of their performance across various dimensions. In this paper, we propose LFED, a Literary Fiction Evaluation Dataset, which aims to…

Computation and Language · Computer Science 2024-05-17 Linhao Yu , Qun Liu , Deyi Xiong

LLM-powered multimodal systems are increasingly used to interpret human behavior, yet how researchers apply the models' 'social competence' remains poorly understood. This paper presents a systematic literature review of 176 publications…

Human-Computer Interaction · Computer Science 2025-11-19 Zihan Liu , Parisa Rabbani , Veda Duddu , Kyle Fan , Madison Lee , Yun Huang

Novel scientific knowledge is constantly produced by the scientific community. Understanding the level of novelty characterized by scientific literature is key for modeling scientific dynamics and analyzing the growth mechanisms of…

Digital Libraries · Computer Science 2018-01-30 Jiangen He , Chaomei Chen

The advances of the Linked Open Data (LOD) initiative are giving rise to a more structured Web of data. Indeed, a few datasets act as hubs (e.g., DBpedia) connecting many other datasets. They also made possible new Web services for entity…

Information Retrieval · Computer Science 2019-05-01 Mazen Alsarem , Pierre-Edouard Portier , Sylvie Calabretto , Harald Kosch

The intricate relationship between genetic variation and human diseases has been a focal point of medical research, evidenced by the identification of risk genes regarding specific diseases. The advent of advanced genome sequencing…

Quantitative Methods · Quantitative Biology 2024-01-19 Jiayu Chang , Shiyu Wang , Chen Ling , Zhaohui Qin , Liang Zhao

Scientific knowledge is growing rapidly, making it difficult to track progress and high-level conceptual links across broad disciplines. While tools like citation networks and search engines help retrieve related papers, they lack the…

Computation and Language · Computer Science 2025-10-29 Muhan Gao , Jash Shah , Weiqi Wang , Kuan-Hao Huang , Daniel Khashabi

The Interaction between Drugs and Targets (DTI) in human body plays a crucial role in biomedical science and applications. As millions of papers come out every year in the biomedical domain, automatically discovering DTI knowledge from…

Computation and Language · Computer Science 2021-09-28 Yutai Hou , Yingce Xia , Lijun Wu , Shufang Xie , Yang Fan , Jinhua Zhu , Wanxiang Che , Tao Qin , Tie-Yan Liu

Recommendation systems have an important place to help online users in the internet society. Recommendation Systems in computer science are of very practical use these days in various aspects of the Internet portals, such as social…

Information Retrieval · Computer Science 2018-12-21 Hamed Jelodar , Yongli Wang , Mahdi Rabbani , Ru-xin Zhao , Seyedvalyallah Ayobi , Peng Hu , Isma Masood

Objectieve:This review aims to deliver a comprehensive analysis of Large Language Models (LLMs) utilization in mental health care, evaluating their effectiveness, identifying challenges, and exploring their potential for future application.…

A systematic literature review (SLR) is a methodology used to find and aggregate all relevant existing evidence about a specific research question of interest. Important decisions need to be made at several points in the review process,…

Software Engineering · Computer Science 2020-12-22 Katia R. Felizardo , Stephen G. MacDonell , Emília Mendes , José Carlos Maldonado

Skin cancer is one of the most common types of malignancy, affecting a large population and causing a heavy economic burden worldwide. Over the last few years, computer-aided diagnosis has been rapidly developed and make great progress in…

Computer Vision and Pattern Recognition · Computer Science 2022-03-31 Yongwei Wang , Yuheng Wang , Tim K. Lee , Chunyan Miao , Z. Jane Wang

Webology is an international peer-reviewed journal in English devoted to the field of the World Wide Web and serves as a forum for discussion and experimentation. It serves as a forum for new research in information dissemination and…

Digital Libraries · Computer Science 2025-11-03 Muneer Ahmad , M. Sadik Batcha , Basharat Ahmad Wani , Mohammad Idrees Khan , S. Roselin Jahina
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