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This is a companion Focus Demonstration article to the PyMUSE python package, demonstrating its usage and utilities for VLT/MUSE data analysis, that include a wide range of options for spectra extractions, the creation of different types of…

Instrumentation and Methods for Astrophysics · Physics 2018-03-20 Ismael Pessa , Nicolas Tejos , Cristobal Moya

FCMpy is an open source package in Python for building and analyzing Fuzzy Cognitive Maps. More specifically, the package allows 1) deriving fuzzy causal weights from qualitative data, 2) simulating the system behavior, 3) applying machine…

Mathematical Software · Computer Science 2022-11-03 Samvel Mkhitaryan , Philippe J. Giabbanelli , Maciej K. Wozniak , Gonzalo Napoles , Nanne K. de Vries , Rik Crutzen

PSRCHIVE is an open-source, object-oriented, scientific data analysis software library and application suite for pulsar astronomy. It implements an extensive range of general-purpose algorithms for use in data calibration and integration,…

Instrumentation and Methods for Astrophysics · Physics 2012-05-30 Willem van Straten , Paul Demorest , Stefan Osłowski

PLUMED is an open-source software package that is widely used for analyzing and enhancing molecular dynamics simulations that works in conjunction with most available molecular dynamics softwares. While the computational cost of PLUMED…

Computational Physics · Physics 2025-11-05 Daniele Rapetti , Massimiliano Bonomi , Carlo Camilloni , Giovanni Bussi , Gareth A. Tribello

CHEMSMART (Chemistry Simulation and Modeling Automation Toolkit) is an open-source, Python-based framework designed to streamline quantum chemistry workflows for homogeneous catalysis and molecular modeling. By integrating job preparation,…

Chemical Physics · Physics 2025-08-28 Xinglong Zhang , Huiwen Tan , Jingyi Liu , Zihan Li , Lewen Wang , Benjamin W. J. Chen

To reduce and analyze astronomical images, astronomers can rely on a wide range of libraries providing low-level implementations of legacy algorithms. However, combining these routines into robust and functional pipelines requires a major…

Instrumentation and Methods for Astrophysics · Physics 2021-11-17 Lionel J. Garcia , Mathilde Timmermans , Francisco J. Pozuelos , Elsa Ducrot , Michaël Gillon , Laetitia Delrez , Robert D. Wells , Emmanuël Jehin

Fisher matrices are used frequently in the analysis of combining cosmological constraints from various data sets. They encode the Gaussian uncertainties of multiple variables. They are simple to use, and I show how to get up and running…

Instrumentation and Methods for Astrophysics · Physics 2009-06-24 Dan Coe

This paper introduces ENFrame, a unified data processing platform for querying and mining probabilistic data. Using ENFrame, users can write programs in a fragment of Python with constructs such as bounded-range loops, list comprehension,…

Databases · Computer Science 2013-09-03 Sebastiaan J. van Schaik , Dan Olteanu , Robert Fink

The usage of the high-level scripting language Python has enabled new mechanisms for data interrogation, discovery and visualization of scientific data. We present yt, an open source, community-developed astrophysical analysis and…

Instrumentation and Methods for Astrophysics · Physics 2011-12-21 Matthew J. Turk , Britton D. Smith

We present pyroomacoustics, a software package aimed at the rapid development and testing of audio array processing algorithms. The content of the package can be divided into three main components: an intuitive Python object-oriented…

Sound · Computer Science 2019-05-08 Robin Scheibler , Eric Bezzam , Ivan Dokmanić

We have implemented an extension for the observational seismology obspy software package to provide a streamlined tool tailored to the processing of seismic signals from non-earthquake sources, in particular those from deforming systems…

Geophysics · Physics 2021-08-20 Ross J. Turner , Rebecca B. Latto , Anya M. Reading

Our understanding of the dynamics of the interstellar medium is informed by the study of the detailed velocity structure of emission line observations. One approach to study the velocity structure is to decompose the spectra into individual…

Instrumentation and Methods for Astrophysics · Physics 2019-08-14 Manuel Riener , Jouni Kainulainen , Jonathan D. Henshaw , Jan H. Orkisz , Claire E. Murray , Henrik Beuther

partycls is a Python framework for cluster analysis of systems of interacting particles. By grouping particles that share similar structural or dynamical properties, partycls enables rapid and unsupervised exploration of the system's…

Computational Physics · Physics 2021-11-22 Joris Paret , Daniele Coslovich

Program synthesis is an umbrella term for generating programs and logical formulae from specifications. With the remarkable performance improvements that GPUs enable for deep learning, a natural question arose: can we also implement a…

Programming Languages · Computer Science 2025-04-29 Martin Berger , Nathanaël Fijalkow , Mojtaba Valizadeh

We present a new Python package, gwbench, implementing the well-established Fisher information formalism as a fast and straightforward tool for the purpose of gravitational-wave benchmarking, i.e. the estimation of signal-to-noise ratios…

General Relativity and Quantum Cosmology · Physics 2021-08-31 Ssohrab Borhanian

anesthetic is a Python package for processing nested sampling runs, and will be useful for any scientist or statistician who uses nested sampling software. anesthetic unifies many existing tools and techniques in an extensible framework…

Instrumentation and Methods for Astrophysics · Physics 2019-05-14 Will Handley

This paper presents gnss_lib_py, a Python library used to parse, analyze, and visualize data from a variety of GNSS (Global Navigation Satellite Systems) data sources. The gnss_lib_py library's ease of use, modular capabilities, testing…

Robotics · Computer Science 2024-08-20 Derek Knowles , Ashwin Vivek Kanhere , Daniel Neamati , Grace Gao

Raman spectroscopy is a non-destructive and label-free chemical analysis technique, which plays a key role in the analysis and discovery cycle of various branches of science. Nonetheless, progress in Raman spectroscopic analysis is still…

Automated searches for strong gravitational lensing in optical imaging survey datasets often employ machine learning and deep learning approaches. These techniques require more example systems to train the algorithms than have presently…

Instrumentation and Methods for Astrophysics · Physics 2021-02-08 Robert Morgan , Brian Nord , Simon Birrer , Joshua Yao-Yu Lin , Jason Poh

Gaussian Processes (GPs) are widely used tools in statistics, machine learning, robotics, computer vision, and scientific computation. However, despite their popularity, they can be difficult to apply; all but the simplest classification or…

Machine Learning · Computer Science 2016-01-06 Ulrich Schaechtle , Ben Zinberg , Alexey Radul , Kostas Stathis , Vikash K. Mansinghka