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Recent work has shown that sparse graphs containing many triangles cannot be reproduced using a finite-dimensional representation of the nodes, in which link probabilities are inner products. Here, we show that such graphs can be reproduced…

Machine Learning · Statistics 2023-04-24 Hannah Sansford , Alexander Modell , Nick Whiteley , Patrick Rubin-Delanchy

Understanding how biological constraints shape neural computation is a central goal of computational neuroscience. Spatially embedded recurrent neural networks provide a promising avenue to study how modelled constraints shape the combined…

Neural and Evolutionary Computing · Computer Science 2024-09-27 Cornelia Sheeran , Andrew S. Ham , Duncan E. Astle , Jascha Achterberg , Danyal Akarca

We introduce a nonlinear method for directly embedding large, sparse, stochastic graphs into low-dimensional spaces, without requiring vertex features to reside in, or be transformed into, a metric space. Graph data and models are prevalent…

Machine Learning · Computer Science 2019-06-14 Nikos Pitsianis , Alexandros-Stavros Iliopoulos , Dimitris Floros , Xiaobai Sun

Unsupervised feature learning often finds low-dimensional embeddings that capture the structure of complex data. For tasks for which prior expert topological knowledge is available, incorporating this into the learned representation may…

Machine Learning · Computer Science 2022-03-08 Robin Vandaele , Bo Kang , Jefrey Lijffijt , Tijl De Bie , Yvan Saeys

Graph embedding is a transformation of nodes of a graph into a set of vectors. A~good embedding should capture the graph topology, node-to-node relationship, and other relevant information about the graph, its subgraphs, and nodes. If these…

Social and Information Networks · Computer Science 2022-06-22 Arash Dehghan-Kooshkghazi , Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

The iterations of many sparse estimation algorithms are comprised of a fixed linear filter cascaded with a thresholding nonlinearity, which collectively resemble a typical neural network layer. Consequently, a lengthy sequence of algorithm…

Machine Learning · Computer Science 2016-05-11 Bo Xin , Yizhou Wang , Wen Gao , David Wipf

Interactive exploration of large, multidimensional datasets plays a very important role in various scientific fields. It makes it possible not only to identify important structural features and forms, such as clusters of vertices and their…

Machine Learning · Computer Science 2023-03-10 Bartosz Minch

Networks with underlying metric spaces attract increasing research attention in network science, statistical physics, applied mathematics, computer science, sociology, and other fields. This attention is further amplified by the current…

Physics and Society · Physics 2020-04-22 Marian Boguna , Dmitri Krioukov , Pedro Almagro , M. Angeles Serrano

Finding a reduction of complex, high-dimensional dynamics to its essential, low-dimensional "heart" remains a challenging yet necessary prerequisite for designing efficient numerical approaches. Machine learning methods have the potential…

Dynamical Systems · Mathematics 2022-06-15 Przemyslaw Zielinski , Jan S. Hesthaven

Mining graph data has become a popular research topic in computer science and has been widely studied in both academia and industry given the increasing amount of network data in the recent years. However, the huge amount of network data…

Machine Learning · Computer Science 2020-01-03 Wenwu Zhu , Xin Wang , Peng Cui

We present FastRP, a scalable and performant algorithm for learning distributed node representations in a graph. FastRP is over 4,000 times faster than state-of-the-art methods such as DeepWalk and node2vec, while achieving comparable or…

Social and Information Networks · Computer Science 2019-09-02 Haochen Chen , Syed Fahad Sultan , Yingtao Tian , Muhao Chen , Steven Skiena

Low-dimensional node embeddings play a key role in analyzing graph datasets. However, little work studies exactly what information is encoded by popular embedding methods, and how this information correlates with performance in downstream…

Machine Learning · Computer Science 2021-02-18 Sudhanshu Chanpuriya , Cameron Musco , Konstantinos Sotiropoulos , Charalampos E. Tsourakakis

Standard Adjacency Spectral Embedding (ASE) relies on a global low-rank assumption often incompatible with the sparse, transitive structure of real-world networks, causing local geometric features to be 'smeared'. To address this, we…

Machine Learning · Statistics 2026-03-13 Hannah Sansford , Nick Whiteley , Patrick Rubin-Delanchy

Network embedding is an effective method to learn low-dimensional representations of nodes, which can be applied to various real-life applications such as visualization, node classification, and link prediction. Although significant…

Machine Learning · Computer Science 2020-03-31 Shixun Huang , Zhifeng Bao , Guoliang Li , Yanghao Zhou , J. Shane Culpepper

A complex network is a condensed representation of the relational topological framework of a complex system. A main reason for the existence of such networks is the transmission of items through the entities of these complex systems. Here,…

Physics and Society · Physics 2018-04-18 María Pereda , Ernesto Estrada

We apply recent advances in machine learning and computer vision to a central problem in materials informatics: The statistical representation of microstructural images. We use activations in a pre-trained convolutional neural network to…

Computational Physics · Physics 2018-12-04 Nicholas Lubbers , Turab Lookman , Kipton Barros

Geometry can be used to explain many properties commonly observed in real networks. It is therefore often assumed that real networks, especially those with high average local clustering, live in an underlying hidden geometric space.…

Physics and Society · Physics 2024-04-11 J. van der Kolk , M. Á. Serrano , M. Boguñá

Hypergraphs, increasingly utilised for modelling complex and diverse relationships in modern networks, gain much attention representing intricate higher-order interactions. Among various challenges, cohesive subgraph discovery is one of the…

Social and Information Networks · Computer Science 2025-12-30 Song Kim , Dahee Kim , Taejoon Han , Junghoon Kim , Hyun Ji Jeong , Jungeun Kim

Dimensionality is one of the most important properties of complex physical systems. However, only recently this concept has been considered in the context of complex networks. In this paper we further develop the previously introduced…

Physics and Society · Physics 2013-08-19 Filipi Nascimento Silva , Luciano da Fontoura Costa

Embeddings are a basic initial feature extraction step in many machine learning models, particularly in natural language processing. An embedding attempts to map data tokens to a low-dimensional space where similar tokens are mapped to…

Machine Learning · Computer Science 2025-04-10 Golara Ahmadi Azar , Melika Emami , Alyson Fletcher , Sundeep Rangan