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We consider the dynamics of bodies with "active" microstructure described by vector-valued phase fields. For waves with time-varying amplitude, the associated evolution equation involves a matrix that can be non-normal, depending on the…

Mathematical Physics · Physics 2025-02-18 Michele Benzi , Daniele La Pegna , Paolo Maria Mariano

We present a framework for generating multiple imputations for continuous data when the missing data mechanism is unknown. Imputations are generated from more than one imputation model in order to incorporate uncertainty regarding the…

Applications · Statistics 2013-01-14 Juned Siddique , Ofer Harel , Catherine M. Crespi

Cellular response to a perturbation is the result of a dynamic system of biological variables linked in a complex network. A major challenge in drug and disease studies is identifying the key factors of a biological network that are…

Applications · Statistics 2014-09-02 Lisa M. Pham , Luis Carvalho , Scott Schaus , Eric D. Kolaczyk

Frequency modulation by perturbation is the essential trait that differentiates limit cycle oscillators from phase oscillators. We studied networks of identical limit cycle oscillators whose frequencies are modulated sensitively by the…

Adaptation and Self-Organizing Systems · Physics 2015-05-13 Masashi Tachikawa

Neuron models built from experimental data have successfully predicted observed voltage oscillations within and beyond training range. A tantalising prospect is the possibility of estimating the unobserved dynamics of ion channels which is…

Neurons and Cognition · Quantitative Biology 2025-08-28 Ian Williams , Joseph D. Taylor , Alain Nogaret

Electroencephalography (EEG) monitors ---by either intrusive or noninvasive electrodes--- time and frequency variations and spectral content of voltage fluctuations or waves, known as brain rhythms, which in some way uncover activity during…

Neurons and Cognition · Quantitative Biology 2019-03-13 Javier A. Galadí , Joaquín J. Torres , J. Marro

In recent times whole-genome gene expression analysis has turned out to be a highly important tool to study the coordinated function of a very large number of genes within their corresponding cellular environment, especially in relation to…

Genomics · Quantitative Biology 2009-09-21 Enrique Hernandez-Lemus

Oscillatory dynamics are common features of complex networks, often playing essential roles in regulating function. Across scales from gene regulatory networks to ecosystems, delayed feedback mechanisms are key drivers of system-scale…

Disordered Systems and Neural Networks · Physics 2026-03-06 Shijie Liu , Jinliang Han , Jianming Liu , Tim Rogers , Yongzheng Sun

The timing of human labor is among the most critical determinants of neonatal survival, yet the mechanisms that govern the transition from uterine quiescence to coordinated contractions remain elusive. Here we present a dynamical-systems…

Biological Physics · Physics 2026-01-13 Giuseppe Maria Ferro , Andrea Somazzi , Didier Sornette

Understanding the mechanisms of interactions within cells, tissues, and organisms is crucial to driving developments across biology and medicine. Mathematical modeling is an essential tool for simulating biological systems and revealing…

Molecular Networks · Quantitative Biology 2024-08-13 Lingxia Qiao , Ali Khalilimeybodi , Nathaniel J Linden-Santangeli , Padmini Rangamani

Currently we routinely develop a complex neuronal network to explain observed but often paradoxical phenomena based upon biological recordings. Here we present a general approach to demonstrate how to mathematically tackle such a complex…

Quantitative Methods · Quantitative Biology 2015-06-03 Yu Wu , Wenlian Lu , Wei Lin , Gareth Leng , Jianfeng Feng

Globally-constrained classical fields provide a unexplored framework for modeling quantum phenomena, including apparent particle-like behavior. By allowing controllable constraints on unknown past fields, these models are retrocausal but…

Quantum Physics · Physics 2018-07-04 Ken Wharton

The rupture of a medium under stress typifies breakdown phenomena. More generally, the latter encompass the dynamics of systems of many interacting elements governed by the interplay of a driving force with a pinning disorder, resulting in…

Statistical Mechanics · Physics 2009-10-31 Rava da Silveira

Accelerator-based neutrino oscillation experiments have the potential to revolutionise our understanding of fundamental physics, offering an opportunity to characterise charge-parity violation in the lepton section, to determine the…

High Energy Physics - Experiment · Physics 2023-01-24 S. Dolan

Many real-world systems are modelled using complex ordinary differential equations (ODEs). However, the dimensionality of these systems can make them challenging to analyze. Dimensionality reduction techniques like Proper Orthogonal…

Computational Engineering, Finance, and Science · Computer Science 2025-02-26 Abhishek Ajayakumar , Soumyendu Raha

Delayed processes are ubiquitous in biological systems and are often characterized by delay differential equations (DDEs) and their extension to include stochastic effects. DDEs do not explicitly incorporate intermediate states associated…

Quantitative Methods · Quantitative Biology 2016-09-28 Jingchen Feng , Stuart Sevier , Bin Huang , Dongya Jia , Herbert Levine

Statistical inference on the explained variation of an outcome by a set of covariates is of particular interest in practice. When the covariates are of moderate to high-dimension and the effects are not sparse, several approaches have been…

Methodology · Statistics 2022-01-24 Hua Yun Chen

The oscillation model has been proposed as a theoretical framework for describing user dynamics in online social networks. This model can model the user dynamics generated by a particular network structure and allow its causal relationships…

Social and Information Networks · Computer Science 2021-05-11 Naoki Hirakura , Masaki Aida

Previous menstrual health literature highlights a variety of signals not included in existing menstrual trackers because they are either difficult to gather or are not typically associated with menstrual health. Since it has become…

Human-Computer Interaction · Computer Science 2024-09-09 Georgianna Lin , Brenna Li , Helen Li , Chloe Zhao , Khai N Truong , Alex Mariakakis

Determining mechanistic models of gene regulation, especially underlying phenotypic variation, is a central goal of both mathematical biology and modern evolutionary biology. However, several challenges, involving both common…

Molecular Networks · Quantitative Biology 2025-11-04 Cody E. FitzGerald , Shelley Reich , Victor Agaba , Arjun Mathur , Michael S. Werner , Niall M. Mangan