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A basic issue in optimization, inverse theory,neural networks, computational chemistry and many other problems is the geometrical characterization of high dimensional functions. In inverse calculations one aims to characterize the set of…

Numerical Analysis · Computer Science 2014-05-14 H. Lydia Deng , John A. Scales

Topological Data Analysis (TDA) combines computational topology and data science to extract and analyze intrinsic topological and geometric structures in data set in a metric space. While the persistent homology (PH), a widely used tool in…

Computational Geometry · Computer Science 2025-04-15 Chuanshen Hu , Yu Wang , Kelin Xia , Ke Ye , Yipeng Zhang

Topological Data Analysis (TDA) provides tools to describe the shape of data, but integrating topological features into deep learning pipelines remains challenging, especially when preserving local geometric structure rather than…

Machine Learning · Computer Science 2026-04-21 Elena Xinyi Wang , Arnur Nigmetov , Dmitriy Morozov

Topological data analysis (TDA) is a rising field in the intersection of mathematics, statistics, and computer science/data science. The cornerstone of TDA is persistent homology, which produces a summary of topological information called a…

Computational Geometry · Computer Science 2022-05-24 Yu-Min Chung , Michael Hull , Austin Lawson , Neil Pritchard

Nonparametric estimation of the mean and covariance functions is ubiquitous in functional data analysis and local linear smoothing techniques are most frequently used. Zhang and Wang (2016) explored different types of asymptotic properties…

Statistics Theory · Mathematics 2025-01-28 Shaojun Guo , Dong Li , Xinghao Qiao , Yizhu Wang

Multi-connected universe models with space identification scales smaller than the size of the observable universe produce topological images of cosmic sources. We generalise to locally hyperbolic spaces the crystallographic method, aimed to…

Astrophysics · Physics 2011-05-23 Jean-Philippe Uzan , Roland Lehoucq , Jean-Pierre Luminet

We provide a short introduction to the field of topological data analysis and discuss its possible relevance for the study of complex systems. Topological data analysis provides a set of tools to characterise the shape of data, in terms of…

Data Analysis, Statistics and Probability · Physics 2018-12-05 Vsevolod Salnikov , Daniele Cassese , Renaud Lambiotte

Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

Quantitative Methods · Quantitative Biology 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey

This article studies the problem of reconstructing the topology of a network of interacting agents via observations of the state-evolution of the agents. We focus on the large-scale network setting with the additional constraint of…

Multiagent Systems · Computer Science 2019-10-22 Augusto Santos , Vincenzo Matta , Ali H. Sayed

Topological data analysis (TDA) aims to extract noise-robust features from a data set by examining the number and persistence of holes in its topology. We show that a computational problem closely related to a core task in TDA --…

Quantum Physics · Physics 2024-10-29 Casper Gyurik , Alexander Schmidhuber , Robbie King , Vedran Dunjko , Ryu Hayakawa

Topological defects (TDs) are crucial for understanding important physical properties of crystalline materials including mechanical failure, ion transport, and two-dimensional melting. This concept has not translated to disordered materials…

Materials Science · Physics 2026-04-09 Matteo Baggioli , Michael L. Falk , Walter Kob

Classical unsupervised learning methods like clustering and linear dimensionality reduction parametrize large-scale geometry when it is discrete or linear, while more modern methods from manifold learning find low dimensional representation…

Machine Learning · Computer Science 2025-09-23 Luis Scoccola , Uzu Lim , Heather A. Harrington

While the strength of Topological Data Analysis has been explored in many studies on high dimensional numeric data, it is still a challenging task to apply it to text. As the primary goal in topological data analysis is to define and…

Machine Learning · Computer Science 2020-03-31 Shafie Gholizadeh , Ketki Savle , Armin Seyeditabari , Wlodek Zadrozny

An essential aspect of cosmic voids is that these underdense regions provide complementary information about the properties of our Universe. Unlike dense regions, voids are avoided by matter and are less contaminated by baryonic processes.…

Cosmology and Nongalactic Astrophysics · Physics 2022-09-16 Md Rasel Hossen , Sonia Akter Ema , Krzysztof Bolejko , Geraint F. Lewis

With the rapid adoption of machine learning techniques for large-scale applications in science and engineering comes the convergence of two grand challenges in visualization. First, the utilization of black box models (e.g., deep neural…

Topological Data Analysis (TDA) provides novel approaches that allow us to analyze the geometrical shapes and topological structures of a dataset. As one important application, TDA can be used for data visualization and dimension reduction.…

Machine Learning · Statistics 2022-06-06 Hengrui Luo , Alice Patania , Jisu Kim , Mikael Vejdemo-Johansson

In the context of rapid urbanization, understanding the patterns of urban residents' activities and mobility is crucial for optimizing transportation systems and enhancing urban management efficiency. This study addresses the limitations of…

Applications · Statistics 2024-06-25 Nuoxian Huang , Yulin Wu

There are two prominent applications of the mathematical concept of topology to the physics of materials: band topology, which classifies different topological insulators and semimetals, and topological defects that represent immutable…

Materials Science · Physics 2022-08-11 Zhi-Kang Lin , Qiang Wang , Yang Liu , Haoran Xue , Baile Zhang , Yidong Chong , Jian-Hua Jiang

Structural disorder can improve the optical properties of metasurfaces, whether it is emerging from some large-scale fabrication methods, or explicitly designed and built lithographically. Correlated disorder, induced by a minimum…

Topological data analysis (TDA) is an emerging mathematical concept for characterizing shapes in complex data. In TDA, persistence diagrams are widely recognized as a useful descriptor of data, and can distinguish robust and noisy…

Algebraic Topology · Mathematics 2016-04-27 Genki Kusano , Kenji Fukumizu , Yasuaki Hiraoka