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In the present article we describe and discuss a framework for applying different topological data analysis (TDA) techniques to a music fragment given as a score in traditional Western notation. We first consider different sets of points in…

Algebraic Topology · Mathematics 2022-12-13 Alberto Alcalá-Alvarez , Pablo Padilla-Longoria

Topological Data Analysis (TDA) has been successfully used for various tasks in signal/image processing, from visualization to supervised/unsupervised classification. Often, topological characteristics are obtained from persistent homology…

Sound · Computer Science 2023-10-11 Guillem Bonafos , Jean-Marc Freyermuth , Pierre Pudlo , Samuel Tronçon , Arnaud Rey

Random data augmentations (RDAs) are state of the art regarding practical graph neural networks that are provably universal. There is great diversity regarding terminology, methodology, benchmarks, and evaluation metrics used among existing…

Machine Learning · Computer Science 2022-03-22 Billy Joe Franks , Markus Anders , Marius Kloft , Pascal Schweitzer

Statistical analysis of functional data is challenging due to their complex patterns, for which functional depth provides an effective means of reflecting their ordering structure. In this work, we investigate practical aspects of the…

Methodology · Statistics 2026-02-27 Filip Bočinec , Stanislav Nagy , Hyemin Yeon

In this paper, we introduce the persistence transformation, a novel methodology in Topological Data Analysis (TDA) for applications in time series data which can be obtained in various areas such as science, politics, economy, healthcare,…

Algebraic Topology · Mathematics 2024-01-31 Gideon Klaila , Anastasios Stefanou , Lena Ranke

Modern deep neural networks are powerful predictive tools yet often lack valid inference for causal parameters, such as treatment effects or entire survival curves. While frameworks like Double Machine Learning (DML) and Targeted Maximum…

Machine Learning · Computer Science 2025-07-17 Yi Li , David Mccoy , Nolan Gunter , Kaitlyn Lee , Alejandro Schuler , Mark van der Laan

Topological Data Analysis (TDA) refers to an approach that uses concepts from algebraic topology to study the "shapes" of datasets. The main focus of this paper is persistent homology, a ubiquitous tool in TDA. Basing our study on this, we…

Probability · Mathematics 2016-04-15 Takashi Owada

Complex prediction models such as deep learning are the output from fitting machine learning, neural networks, or AI models to a set of training data. These are now standard tools in science. A key challenge with the current generation of…

Machine Learning · Computer Science 2022-10-21 Meng Liu , Tamal K. Dey , David F. Gleich

We use topological data analysis (TDA) to study how data transforms as it passes through successive layers of a deep neural network (DNN). We compute the persistent homology of the activation data for each layer of the network and summarize…

Machine Learning · Computer Science 2022-05-09 Matthew Wheeler , Jose Bouza , Peter Bubenik

Many variants of unsupervised domain adaptation (UDA) problems have been proposed and solved individually. Its side effect is that a method that works for one variant is often ineffective for or not even applicable to another, which has…

Computer Vision and Pattern Recognition · Computer Science 2021-06-04 Yu Mitsuzumi , Go Irie , Daiki Ikami , Takashi Shibata

Software libraries for Topological Data Analysis (TDA) offer limited support for interactive visualization. Most libraries only allow to visualize topological descriptors (e.g., persistence diagrams), and lose the connection with the…

Graphics · Computer Science 2022-04-22 Xueyi Bao , Guoxi Liu , Federico Iuricich

Topological data analysis is becoming increasingly relevant to support the analysis of unstructured data sets. A common assumption in data analysis is that the data set is a sample---not necessarily a uniform one---of some high-dimensional…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Markus Banagl , Filip Sadlo , Heike Leitte

Modern machine learning and deep learning models are shown to be vulnerable when testing data are slightly perturbed. Existing theoretical studies of adversarial training algorithms mostly focus on either adversarial training losses or…

Machine Learning · Statistics 2021-04-07 Yue Xing , Qifan Song , Guang Cheng

Topological Data Analysis (TDA) is a novel new and fast growing field of data science providing a set of new topological and geometric tools to derive relevant features out of complex high-dimensional data. In this paper we apply two of…

Computation and Language · Computer Science 2019-06-06 Naiereh Elyasi , Mehdi Hosseini Moghadam

The paper suggests the use of Multi-Valued Decision Diagrams (MDDs) as the supporting data structure for a generic global constraint. We give an algorithm for maintaining generalized arc consistency (GAC) on this constraint that amortizes…

Artificial Intelligence · Computer Science 2007-05-23 Peter Tiedemann , Henrik Reif Andersen , Rasmus Pagh

In high-dimensional and/or non-parametric regression problems, regularization (or penalization) is used to control model complexity and induce desired structure. Each penalty has a weight parameter that indicates how strongly the structure…

Machine Learning · Statistics 2017-03-30 Jean Feng , Noah Simon

Comparison of data representations is a complex multi-aspect problem that has not enjoyed a complete solution yet. We propose a method for comparing two data representations. We introduce the Representation Topology Divergence (RTD),…

Machine Learning · Computer Science 2023-05-05 Serguei Barannikov , Ilya Trofimov , Nikita Balabin , Evgeny Burnaev

Topological Data Analysis (TDA) has emerged as a powerful framework for extracting robust, multiscale, and interpretable features from complex molecular data for artificial intelligence (AI) modeling and topological deep learning (TDL).…

Biomolecules · Quantitative Biology 2025-09-23 JunJie Wee , Jian Jiang

This paper describes a localized algorithm for the topological simplification of scalar data, an essential pre-processing step of topological data analysis (TDA). Given a scalar field f and a selection of extrema to preserve, the proposed…

Data Structures and Algorithms · Computer Science 2020-09-02 Jonas Lukasczyk , Christoph Garth , Ross Maciejewski , Julien Tierny

Understanding the behavior and evolution of a dynamical many-body system by analyzing patterns in their experimentally captured images is a promising method relevant for a variety of living and non-living self-assembled systems. The arrays…