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The Spanning Tree Congestion (STC) problem is the following NP-hard problem: given a graph $G$, construct a spanning tree $T$ of $G$ minimizing its maximum edge congestion where the congestion of an edge $e\in T$ is the number of edges $uv$…

Data Structures and Algorithms · Computer Science 2026-05-05 Petr Kolman

Hierarchical clustering is a fundamental task in data analysis, yet for a long time it lacked a principled objective function. Dasgupta [STOC 2016] initiated a formal framework by introducing a discrete objective function for cluster trees.…

Data Structures and Algorithms · Computer Science 2026-04-28 Ryuki Tsukuba , Kazutoshi Ando

In this paper we offer a new perspective on the well established agglomerative clustering algorithm, focusing on recovery of hierarchical structure. We recommend a simple variant of the standard algorithm, in which clusters are merged by…

Machine Learning · Statistics 2024-03-04 Annie Gray , Alexander Modell , Patrick Rubin-Delanchy , Nick Whiteley

Hierarchical clustering is a widely used approach for clustering datasets at multiple levels of granularity. Despite its popularity, existing algorithms such as hierarchical agglomerative clustering (HAC) are limited to the offline setting,…

Machine Learning · Computer Science 2019-09-24 Aditya Krishna Menon , Anand Rajagopalan , Baris Sumengen , Gui Citovsky , Qin Cao , Sanjiv Kumar

Hierarchical Clustering is a popular unsupervised machine learning method with decades of history and numerous applications. We initiate the study of differentially private approximation algorithms for hierarchical clustering under the…

Machine Learning · Computer Science 2023-05-25 Jacob Imola , Alessandro Epasto , Mohammad Mahdian , Vincent Cohen-Addad , Vahab Mirrokni

The Minimum Quartet Tree Cost problem is to construct an optimal weight tree from the $3{n \choose 4}$ weighted quartet topologies on $n$ objects, where optimality means that the summed weight of the embedded quartet topologies is optimal…

Machine Learning · Computer Science 2014-09-16 Rudi L. Cilibrasi , Paul M. B. Vitanyi

We present an approach to model-based hierarchical clustering by formulating an objective function based on a Bayesian analysis. This model organizes the data into a cluster hierarchy while specifying a complex feature-set partitioning that…

Machine Learning · Computer Science 2013-01-18 Shivakumar Vaithyanathan , Byron E Dom

Hierarchical Clustering is a popular tool for understanding the hereditary properties of a data set. Such a clustering is actually a sequence of clusterings that starts with the trivial clustering in which every data point forms its own…

Data Structures and Algorithms · Computer Science 2022-05-04 Anna Arutyunova , Heiko Röglin

Similarity-based Hierarchical Clustering (HC) is a classical unsupervised machine learning algorithm that has traditionally been solved with heuristic algorithms like Average-Linkage. Recently, Dasgupta reframed HC as a discrete…

Data Structures and Algorithms · Computer Science 2020-10-02 Ines Chami , Albert Gu , Vaggos Chatziafratis , Christopher Ré

Hierarchical structure is ubiquitous in data across many domains. There are many hierarchical clustering methods, frequently used by domain experts, which strive to discover this structure. However, most of these methods limit discoverable…

Machine Learning · Computer Science 2012-03-19 Charles Blundell , Yee Whye Teh , Katherine A. Heller

Hierarchical clustering is a fundamental task often used to discover meaningful structures in data, such as phylogenetic trees, taxonomies of concepts, subtypes of cancer, and cascades of particle decays in particle physics. Typically…

Data Structures and Algorithms · Computer Science 2020-10-23 Craig S. Greenberg , Sebastian Macaluso , Nicholas Monath , Ji-Ah Lee , Patrick Flaherty , Kyle Cranmer , Andrew McGregor , Andrew McCallum

The Steiner tree problem is one of the classic and most fundamental $\mathcal{NP}$-hard problems: given an arbitrary weighted graph, seek a minimum-cost tree spanning a given subset of the vertices (terminals). Byrka \emph{et al}. proposed…

Data Structures and Algorithms · Computer Science 2018-11-02 Chi-Yeh Chen

Hierarchical clustering is a critical task in numerous domains. Many approaches are based on heuristics and the properties of the resulting clusterings are studied post hoc. However, in several applications, there is a natural cost function…

We study the complexity of finding an optimal hierarchical clustering of an unweighted similarity graph under the recently introduced Dasgupta objective function. We introduce a proof technique, called the normalization procedure, that…

Computational Complexity · Computer Science 2020-08-10 Svein Høgemo , Christophe Paul , Jan Arne Telle

The primary goal in cluster analysis is to discover natural groupings of objects. The field of cluster analysis is crowded with diverse methods that make special assumptions about data and address different scientific aims. Despite its…

Genomics · Quantitative Biology 2018-06-07 Gary K. Chen , Eric Chi , John Ranola , Kenneth Lange

We consider the classic correlation clustering problem in the hierarchical setting. Given a complete graph $G=(V,E)$ and $\ell$ layers of input information, where the input of each layer consists of a nonnegative weight and a labeling of…

Data Structures and Algorithms · Computer Science 2025-04-10 Hyung-Chan An , Mong-Jen Kao , Changyeol Lee , Mu-Ting Lee

We consider the problem of constructing an an optimal-weight tree from the 3*(n choose 4) weighted quartet topologies on n objects, where optimality means that the summed weight of the embedded quartet topologiesis optimal (so it can be the…

Data Structures and Algorithms · Computer Science 2011-11-09 Rudi Cilibrasi , Paul M. B. Vitanyi

The problem of biclustering consists of the simultaneous clustering of rows and columns of a matrix such that each of the submatrices induced by a pair of row and column clusters is as uniform as possible. In this paper we approximate the…

Data Structures and Algorithms · Computer Science 2008-08-22 Kai Puolamäki , Sami Hanhijärvi , Gemma C. Garriga

We investigate active learning by pairwise similarity over the leaves of trees originating from hierarchical clustering procedures. In the realizable setting, we provide a full characterization of the number of queries needed to achieve…

Machine Learning · Computer Science 2019-10-15 Fabio Vitale , Anand Rajagopalan , Claudio Gentile

Clustering is a fundamental building block of modern statistical analysis pipelines. Fair clustering has seen much attention from the machine learning community in recent years. We are some of the first to study fairness in the context of…

Machine Learning · Computer Science 2023-05-11 Marina Knittel , Max Springer , John P. Dickerson , MohammadTaghi Hajiaghayi