English
Related papers

Related papers: Understanding cytoskeletal avalanches using mechan…

200 papers

Crackling noise, which occurs in a wide range of situations, is characterized by discrete events of various sizes, often correlated in the form of avalanches. We report experimental evidence that the mechanical response of knitted fabric…

Soft Condensed Matter · Physics 2018-08-08 Samuel Poincloux , Mokhtar Adda-Bedia , Frédéric Lechenault

An avalanche or cascade occurs when one event causes one or more subsequent events, which in turn may cause further events in a chain reaction. Avalanching dynamics are studied in many disciplines, with a recent focus on average avalanche…

Physics and Society · Physics 2024-01-31 James P Gleeson , Rick Durrett

Continuum models of active nematic gels have proved successful to describe a number of biological systems consisting of a population of rodlike motile subunits in a fluid environment. However, in order to get a thorough understanding of the…

Soft Condensed Matter · Physics 2023-05-03 Stefano Turzi

A cell membrane can be simply regarded as composite material consisting of lipid bilayer, membrane cytoskeleton beneath lipid bilayer, and proteins embedded in lipid bilayer and linked with membrane cytoskeleton if one only concerns its…

Other Quantitative Biology · Quantitative Biology 2007-06-26 Z. C. Tu , R. An , Z. C. Ou-Yang

Many materials, processes, and structures in science and engineering have important features at multiple scales of time and/or space; examples include biological tissues, active matter, oceans, networks, and images. Explicitly extracting,…

Fluid Dynamics · Physics 2021-01-12 Daniel Floryan , Michael D. Graham

Biochemical oscillations are ubiquitous in nature and allow organisms to properly time their biological functions. In this paper, we consider minimal Markov state models of nonequilibrium biochemical networks that support oscillations. We…

Statistical Mechanics · Physics 2020-02-04 Clara del Junco , Suriyanarayanan Vaikuntanathan

Avalanche-like plastic bursts in crystalline materials follow power law statistics, but the scaling exponents and cutoff parameters vary widely in the literature ($\alpha$ ranging from 1 to 2.2), hindering predictive modeling. Since…

Materials Science · Physics 2026-04-24 Missipsa Aissaoui , Charlie Kahloun , Oguz Umut Salman , Sylvain Queyreau

This work is devoted to establishing the mechanisms of elastic oscillation influence on nucleation processes in metal melts. The method of physical modeling with low-temperature metallic alloys (Wood and Rose) and transparent organic media…

Materials Science · Physics 2026-02-10 A. S. Nuradinov , O. V. Chistyakov , K. A. Sirenko , I. A. Nuradinov , D. O. Derecha

A detailed characterization of avalanche dynamics of wet granular media in a rotating drum apparatus is presented. The results confirm the existence of the three wetness regimes observed previously: the granular, the correlated and the…

Disordered Systems and Neural Networks · Physics 2007-05-23 P. Tegzes , T. Vicsek , P. Schiffer

Eukaryote cells have a flexible shape, which dynamically changes according to the function performed by the cell. One mechanism for deforming the cell membrane into the desired shape is through the expression of curved membrane proteins.…

Biological Physics · Physics 2018-12-05 Miha Fošnarič , Samo Penič , Aleš Iglič , Veronika Kralj-Iglič , Mitja Drab , Nir Gov

Self organization mechanisms are essential for the cytoskeleton to adapt to the requirements of living cells. They rely on the intricate interplay of cytoskeletal filaments, crosslinking proteins and molecular motors. Here we present an in…

Biological Physics · Physics 2015-05-28 Simone Köhler , Volker Schaller , Andreas R. Bausch

Crystal plasticity occurs by deformation bursts due to the avalanche-like motion of dislocations. Here we perform extensive numerical simulations of a three-dimensional dislocation dynamics model under quasistatic stress-controlled loading.…

Statistical Mechanics · Physics 2016-08-24 Arttu Lehtinen , Giulio Costantini , Mikko J. Alava , Stefano Zapperi , Lasse Laurson

Species or population that proliferate faster than others become dominant in numbers. Catalysis allows catalytic sets within a molecular reaction network to dominate the non catalytic parts of the network by processing most of the available…

Cell Behavior · Quantitative Biology 2016-08-31 Rudolf Hanel

Using numerical simulations we examine colloids with a long-range Coulomb interaction confined in a two-dimensional trough potential undergoing dynamical compression. As the depth of the confining well is increased, the colloids move via…

Soft Condensed Matter · Physics 2016-06-22 D. McDermott , C. J. Olson Reichhardt , C. Reichhardt

Disordered materials under an imposed forcing can display creep and aging effects, accompanied by intermittent, spatially heterogeneous dynamics. We propose a unifying microscopic description of these phenomena, based on the notion that as…

Disordered Systems and Neural Networks · Physics 2024-09-27 Daniel J. Korchinski , Dor Shohat , Yoav Lahini , Matthieu Wyart

We examine the mobility and velocity fluctuations of a driven particle moving through an active matter bath of self-mobile disks for varied density or area coverage and varied activity. We show that the driven particle mobility can exhibit…

Soft Condensed Matter · Physics 2015-04-01 C. Reichhardt , C. J. Olson Reichhardt

Under applied shear strain, granular and amorphous materials deform via particle rearrangements, which can be small and localized or organized into system-spanning avalanches. While the statistical properties of avalanches under…

Soft Condensed Matter · Physics 2022-03-03 Ethan Stanifer , M. Lisa Manning

The plasma membrane of human red blood cells consists of a lipid bilayer attached to a regular network of underlying cytoskeletal polymers. We model this system at a dynamic coarse-grained level, treating the bilayer as an elastic sheet and…

Subcellular Processes · Quantitative Biology 2009-11-13 Rui Zhang , Frank L. H. Brown

Biopolymer networks are common in biological systems from the cytoskeleton of individual cells to collagen in the extracellular matrix. The mechanics of these systems under applied strain can be explained in some cases by a phase transition…

Soft Condensed Matter · Physics 2022-12-21 Sadjad Arzash , Abhinav Sharma , Fred C. MacKintosh

Predicting the future behaviour of complex systems exhibiting critical-like dynamics is often considered to be an intrinsically hard task. Here, we study the predictability of the depinning dynamics of elastic interfaces in random media…

Statistical Mechanics · Physics 2026-02-03 Valtteri Haavisto , Marcin Mińkowski , Lasse Laurson