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LWF chain graphs combine directed acyclic graphs and undirected graphs. We present a PC-like algorithm that finds the structure of chain graphs under the faithfulness assumption to resolve the problem of scalability of the proposed…

Artificial Intelligence · Computer Science 2020-05-29 Mohammad Ali Javidian , Marco Valtorta , Pooyan Jamshidi

This paper considers a Bayesian view for estimating a sub-network in a Markov random field. The sub-network corresponds to the Markov blanket of a set of query variables, where the set of potential neighbours here is big. We factorize the…

Machine Learning · Statistics 2015-10-07 Dinu Kaufmann , Sonali Parbhoo , Aleksander Wieczorek , Sebastian Keller , David Adametz , Volker Roth

In the modern age of social media and networks, graph representations of real-world phenomena have become an incredibly useful source to mine insights. Often, we are interested in understanding how entities in a graph are interconnected.…

Machine Learning · Computer Science 2021-12-16 Aneesh Komanduri , Justin Zhan

Causal discovery automates the learning of causal Bayesian networks from data and has been of active interest from their beginning. With the sourcing of large data sets off the internet, interest in scaling up to very large data sets has…

Machine Learning · Computer Science 2021-07-20 Yang Li , Kevin B Korb , Lloyd Allison

We propose a scalable Gromov-Wasserstein learning (S-GWL) method and establish a novel and theoretically-supported paradigm for large-scale graph analysis. The proposed method is based on the fact that Gromov-Wasserstein discrepancy is a…

Machine Learning · Computer Science 2019-10-10 Hongteng Xu , Dixin Luo , Lawrence Carin

In real-world networks, predicting the weight (strength) of links is as crucial as predicting the existence of the links themselves. Previous studies have primarily used shallow graph features for link weight prediction, limiting the…

Social and Information Networks · Computer Science 2024-10-29 Jinbi Liang , Cunlai Pu , Xiangbo Shu , Yongxiang Xia , Chengyi Xia

Networks are characterized by structural features, such as degree distribution, triangular closures, and assortativity. This paper addresses the problem of reconstructing instances of continuously (and non-negatively) weighted networks from…

Physics and Society · Physics 2024-12-09 Christian Franssen , Joost Berkhout , Bernd Heidergott

Depending on the interpretation of the type of edges, a chain graph can represent different relations between variables and thereby independence models. Three interpretations, known by the acronyms LWF, MVR, and AMP, are prevalent.…

Methodology · Statistics 2019-02-13 Mohammad Ali Javidian , Marco Valtorta

Modeling long-range interactions, the propagation of information across distant parts of a graph, is a central challenge in graph machine learning. Graph wavelets, inspired by multi-resolution signal processing, provide a principled way to…

Machine Learning · Computer Science 2025-10-14 Filippo Guerranti , Fabrizio Forte , Simon Geisler , Stephan Günnemann

Graph Neural Networks (GNNs) excel in handling graph-structured data but often underperform in link prediction tasks compared to classical methods, mainly due to the limitations of the commonly used message-passing principle. Notably, their…

Machine Learning · Computer Science 2025-02-18 Niloofar Azizi , Nils Kriege , Horst Bischof

Deducing the structure of neural circuits is one of the central problems of modern neuroscience. Recently-introduced calcium fluorescent imaging methods permit experimentalists to observe network activity in large populations of neurons,…

Applications · Statistics 2011-07-22 Yuriy Mishchencko , Joshua T. Vogelstein , Liam Paninski

Learning Markov blanket (MB) structures has proven useful in performing feature selection, learning Bayesian networks (BNs), and discovering causal relationships. We present a formula for efficiently determining the number of MB structures…

Machine Learning · Statistics 2014-07-15 Shyam Visweswaran , Gregory F. Cooper

We propose a new nonlinear factorization model for graphs that are with topological structures, and optionally, node attributes. This model is based on a pseudometric called Gromov-Wasserstein (GW) discrepancy, which compares graphs in a…

Machine Learning · Computer Science 2019-11-21 Hongteng Xu

Traditional clustering algorithms often struggle to capture the complex relationships within graphs and generalise to arbitrary clustering criteria. The emergence of graph neural networks (GNNs) as a powerful framework for learning…

Biological Physics · Physics 2024-09-06 Sam Alexander Martino , João Morado , Chenghao Li , Zhenghao Lu , Edina Rosta

We extend the decomposition approach for learning Bayesian networks (BNs) proposed by (Xie et. al.) to learning multivariate regression chain graphs (MVR CGs), which include BNs as a special case. The same advantages of this decomposition…

Artificial Intelligence · Computer Science 2020-02-26 Mohammad Ali Javidian , Marco Valtorta

Graph structure learning is a core problem in graph-based machine learning, essential for uncovering latent relationships and ensuring model interpretability. However, most existing approaches are ill-suited for large-scale and dynamically…

Machine Learning · Computer Science 2025-05-20 Mohit Kataria , Nikita Malik , Sandeep Kumar , Jayadeva

Graph Neural Networks (GNNs) have recently been utilized to build Collaborative Filtering (CF) models to predict user preferences based on historical user-item interactions. However, there is relatively little understanding of how GNN-based…

Social and Information Networks · Computer Science 2024-01-09 Jun Hu , Bryan Hooi , Shengsheng Qian , Quan Fang , Changsheng Xu

We propose a new yet natural algorithm for learning the graph structure of general discrete graphical models (a.k.a. Markov random fields) from samples. Our algorithm finds the neighborhood of a node by sequentially adding nodes that…

Machine Learning · Statistics 2012-02-09 Praneeth Netrapalli , Siddhartha Banerjee , Sujay Sanghavi , Sanjay Shakkottai

The Weisfeiler-Lehman (WL) test is a classical procedure for graph isomorphism testing. The WL test has also been widely used both for designing graph kernels and for analyzing graph neural networks. In this paper, we propose the…

Machine Learning · Computer Science 2022-02-08 Samantha Chen , Sunhyuk Lim , Facundo Mémoli , Zhengchao Wan , Yusu Wang

We introduce Markov Random Geometric Graphs (MRGGs), a growth model for temporal dynamic networks. It is based on a Markovian latent space dynamic: consecutive latent points are sampled on the Euclidean Sphere using an unknown Markov…

Machine Learning · Computer Science 2022-03-10 Quentin Duchemin , Yohann de Castro
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