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Various Hamiltonian models have been derived for chemical structures belonging to living organisms while the Hamiltonian concept was not applied to life as a whole. However, Hamiltonian components were recently defined for living organisms…

General Physics · Physics 2007-05-23 Michel Bounias

Bayesian mechanics provides a framework that addresses dynamical systems that can be conceptualised as Bayesian inference. However, elucidating the requisite generative models is essential for empirical applications to realistic…

Neurons and Cognition · Quantitative Biology 2024-12-02 Takuya Isomura

Recently, there has been an increasing interest in modelling and computation of physical systems with neural networks. Hamiltonian systems are an elegant and compact formalism in classical mechanics, where the dynamics is fully determined…

Numerical Analysis · Mathematics 2022-06-28 Elena Celledoni , Andrea Leone , Davide Murari , Brynjulf Owren

We consider a non-Hermitian Hamiltonian in order to effectively describe a two-level system coupled to a generic dissipative environment. The total Hamiltonian of the model is obtained by adding a general anti-Hermitian part, depending on…

Quantum Physics · Physics 2013-10-25 Alessandro Sergi , Konstantin G. Zloshchastiev

The behavior of a collection of identical particles is intimately linked to the symmetries of their wavefunction under particle exchange. Topological anyons, arising as quasiparticles in low-dimensional systems, interpolate between bosons…

Quantum Physics · Physics 2026-05-29 Joe Dunlop , Álvaro Tejero , Michalis Skotiniotis , Daniel Manzano

During the COVID-19 pandemic, it became evident that the effectiveness of applying intervention measures is significantly influenced by societal acceptance, which, in turn, is affected by the processes of opinion formation. This article…

We introduce a mathematical description of the impact of sociality in the spread of infectious diseases by integrating an epidemiological dynamics with a kinetic modeling of population-based contacts. The kinetic description leads to study…

Physics and Society · Physics 2021-04-02 G. Dimarco , B. Perthame , G. Toscani , M. Zanella

We extend a technique of approximation of the long-term behavior of a supercritical stochastic epidemic model, using the WKB approximation and a Hamiltonian phase space, to the subcritical case. The limiting behavior of the model and…

Populations and Evolution · Quantitative Biology 2017-07-04 Lee Worden , Ira B. Schwartz , Simone Bianco , Sarah F. Ackley , Thomas M. Lietman , Travis C. Porco

In a vast class of systems, which includes members as diverse as sedimenting particles and bird flocks, interactions do not stem from a potential, and are in general nonreciprocal. Thus, it is not possible to define a conventional energy…

Statistical Mechanics · Physics 2026-04-03 Yu-Bo Shi , Roderich Moessner , Ricard Alert , Marin Bukov

We introduce a kinetic model that couples the movement of a population of individuals with the dynamics of a pathogen in the same population. We consider that transmission occurs when a susceptible and an infectious individual are…

Analysis of PDEs · Mathematics 2026-01-30 Carolina Strecht-Fernandes , Fabio A. C. C. Chalub

We derived a condition under which a coupled system consisting of two finite-dimensional Hamiltonian systems becomes a Hamiltonian system. In many cases, an industrial system can be modeled as a coupled system of some subsystems. Although…

Numerical Analysis · Mathematics 2021-12-28 Shunpei Terakawa , Takaharu Yaguchi

A generalization of the Hamilton-Jacobi theory to arbitrary dynamical systems, including non-Hamiltonian ones, is considered. The generalized Hamilton-Jacobi theory is constructed as a theory of ensemble of identical systems moving in the…

Quantum Physics · Physics 2017-09-06 Sergey A. Rashkovskiy

In this paper we present a unifying geometric and compositional framework for modeling complex physical network dynamics as port-Hamiltonian systems on open graphs. Basic idea is to associate with the incidence matrix of the graph a Dirac…

Optimization and Control · Mathematics 2012-09-07 A. J. van der Schaft , B. M. Maschke

Integrability is a cornerstone of classical mechanics, where it has a precise meaning. Extending this notion to quantum systems, however, remains subtle and unresolved. In particular, deciding whether a quantum Hamiltonian - viewed simply…

Statistical Mechanics · Physics 2026-02-10 Feng He , Arthur Hutsalyuk , Giuseppe Mussardo , Andrea Stampiggi

In this paper we reinterpret the Poisson structure of the Hitchin-type system in cohomological terms. The principal ingredient of a new interpretation in the case of the Beauville system is the meromorphic cohomology of the spectral curve,…

High Energy Physics - Theory · Physics 2007-05-23 D. Talalaev

We present a simple model for describing the dynamics of the interaction between a homogeneous population or society, and the natural resources and reserves that the society needs for its survival. The model is formulated in terms of…

Physics and Society · Physics 2020-04-22 Basil Grammaticos , Ralph Willox , Junkichi Satsuma

We describe classes of ergodic dynamical systems for which some statistical properties are known exactly. These systems have integer dimension, are not globally dissipative, and are defined by a probability density and a two-form. This…

Chaotic Dynamics · Physics 2014-06-09 Zachary Guralnik , Cengiz Pehlevan , Gerald Guralnik

Hamiltonian mechanics describes the evolution of a system through its Hamiltonian. The Hamiltonian typically also represents the energy observable, a Noether-conserved quantity associated with the time-invariance of the law of evolution. In…

Quantum Physics · Physics 2024-03-29 Libo Jiang , Daniel R. Terno , Oscar Dahlsten

Many experimental techniques aim at determining the Hamiltonian of a given system. The Hamiltonian describes the system's evolution in the absence of dissipation, and is often central to control or interpret an experiment. Here, we…

Mesoscale and Nanoscale Physics · Physics 2025-01-08 Vincent Dumont , Markus Bestler , Letizia Catalini , Gabriel Margiani , Oded Zilberberg , Alexander Eichler

The chemomechanical model of Huxley and Simmons (HS) [A. F. Huxley and R. M. Simmons, Nature 233, 533 (1971)] provides a paradigmatic description of mechanically induced collective conformational changes relevant in a variety of biological…

Biological Physics · Physics 2016-06-22 M Caruel , L Truskinovsky