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Partially observed Markov process (POMP) models are powerful tools for time series modeling and analysis. Inherited the flexible framework of R package pomp, the is2 package extends some useful Monte Carlo statistical methodologies to…

Computation · Statistics 2018-11-08 Duc Anh Doan , Dao Nguyen , Xin Dang

This paper presents a focused review of Markov random fields (MRFs)--commonly used probabilistic representations of spatial dependence in discrete spatial domains--for categorical data, with an emphasis on models for binary-valued…

Methodology · Statistics 2026-02-04 J. Brandon Carter , Catherine A. Calder

We present an information-based uncertainty quantification method for general Markov Random Fields. Markov Random Fields (MRF) are structured, probabilistic graphical models over undirected graphs, and provide a fundamental unifying…

Machine Learning · Statistics 2021-07-20 Panagiota Birmpa , Markos A. Katsoulakis

Markov Random Fields (MRFs), a formulation widely used in generative image modeling, have long been plagued by the lack of expressive power. This issue is primarily due to the fact that conventional MRFs formulations tend to use simplistic…

Computer Vision and Pattern Recognition · Computer Science 2016-09-08 Zhirong Wu , Dahua Lin , Xiaoou Tang

I consider the use of Markov random fields (MRFs) on a fine grid to represent latent spatial processes when modeling point-level and areal data, including situations with spatial misalignment. Point observations are related to the grid cell…

Methodology · Statistics 2013-04-09 Christopher J. Paciorek

Graphical models for structured domains are powerful tools, but the computational complexities of combinatorial prediction spaces can force restrictions on models, or require approximate inference in order to be tractable. Instead of…

Machine Learning · Computer Science 2013-09-27 Stephen Bach , Bert Huang , Ben London , Lise Getoor

This paper studies a combination of generative Markov random field (MRF) models and discriminatively trained deep convolutional neural networks (dCNNs) for synthesizing 2D images. The generative MRF acts on higher-levels of a dCNN feature…

Computer Vision and Pattern Recognition · Computer Science 2016-01-19 Chuan Li , Michael Wand

Pathology image analysis is an essential procedure for clinical diagnosis of many diseases. To boost the accuracy and objectivity of detection, nowadays, an increasing number of computer-aided diagnosis (CAD) system is proposed. Among these…

Computer Vision and Pattern Recognition · Computer Science 2021-05-11 Yixin Li , Chen Li , Xiaoyan Li , Kai Wang , Md Mamunur Rahaman , Changhao Sun , Hao Chen , Xinran Wu , Hong Zhang , Qian Wang

Gaussian Markov random fields (GMRFs) are probabilistic graphical models widely used in spatial statistics and related fields to model dependencies over spatial structures. We establish a formal connection between GMRFs and convolutional…

Machine Learning · Statistics 2020-08-11 Per Sidén , Fredrik Lindsten

The matrixdist R package provides a comprehensive suite of tools for the statistical analysis of matrix distributions, including phase-type, inhomogeneous phase-type, discrete phase-type, and related multivariate distributions. This paper…

Computation · Statistics 2025-03-11 Martin Bladt , Alaric Mueller , Jorge Yslas

Partially observed Markov process (POMP) models, also known as hidden Markov models or state space models, are ubiquitous tools for time series analysis. The R package pomp provides a very flexible framework for Monte Carlo statistical…

Methodology · Statistics 2021-05-27 Aaron A. King , Dao Nguyen , Edward L. Ionides

Conditional Random Fields (CRFs) are undirected graphical models, a special case of which correspond to conditionally-trained finite state machines. A key advantage of these models is their great flexibility to include a wide array of…

Machine Learning · Computer Science 2012-12-12 Andrew McCallum

Stereo matching is a core task for many computer vision and robotics applications. Despite their dominance in traditional stereo methods, the hand-crafted Markov Random Field (MRF) models lack sufficient modeling accuracy compared to…

Computer Vision and Pattern Recognition · Computer Science 2024-10-24 Tongfan Guan , Chen Wang , Yun-Hui Liu

Multiplicative mixed models can be applied in a wide range of scientific disciplines, since they are relevant in every situation where an interaction between a fixed effect and a random effect is present. Until now, no R package has been…

Computation · Statistics 2018-11-05 Sofie Pødenphant , Kasper Kristensen , Per B. Brockhoff

Statistical Relational Learning (SRL) models have attracted significant attention due to their ability to model complex data while handling uncertainty. However, most of these models have been limited to discrete domains due to their…

Machine Learning · Computer Science 2021-10-20 Yuqiao Chen , Sriraam Natarajan , Nicholas Ruozzi

Developing satisfactory methodology for the analysis of Markov random field is a very challenging task. Indeed, due to the Markovian dependence structure, the normalizing constant of the fields cannot be computed using standard analytical…

Methodology · Statistics 2017-04-12 Julien Stoehr

Undirected graphical models have been successfully used to jointly model the spatial and the spectral dependencies in earth observing hyperspectral images. They produce less noisy, smooth, and spatially coherent land cover maps and give top…

Computer Vision and Pattern Recognition · Computer Science 2018-12-05 Utsav B. Gewali , Sildomar T. Monteiro

Markov random field (MRF) learning is intractable, and its approximation algorithms are computationally expensive. We target a small subset of MRF that is used frequently in computer vision. We characterize this subset with three concepts:…

Machine Learning · Computer Science 2016-06-09 Rajasekaran Masatran

Markov random fields (MRFs) are a powerful tool for modelling statistical dependencies for a set of random variables using a graphical representation. An important computational problem related to MRFs, called maximum a posteriori (MAP)…

Data Structures and Algorithms · Computer Science 2017-08-11 Alexander Bauer , Shinichi Nakajima , Nico Görnitz , Klaus-Robert Müller

In this paper, we will show that the recently introduced graphical model: Conditional Random Fields (CRF) provides a template to integrate micro-level information about biological entities into a mathematical model to understand their…

Machine Learning · Computer Science 2020-08-07 Lior Lukov , Sanjay Chawla , Wei Liu , Brett Church , Gaurav Pandey
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