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Computational Grids are emerging as a popular paradigm for solving large-scale compute and data intensive problems in science, engineering, and commerce. However, application composition, resource management and scheduling in these…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Rajkumar Buyya , Kim Branson , Jon Giddy , David Abramson

Generating images via the generative adversarial network (GAN) has attracted much attention recently. However, most of the existing GAN-based methods can only produce low-resolution images of limited quality. Directly generating…

Computer Vision and Pattern Recognition · Computer Science 2019-04-01 Yong Guo , Qi Chen , Jian Chen , Qingyao Wu , Qinfeng Shi , Mingkui Tan

We study how to generate molecule conformations (i.e., 3D structures) from a molecular graph. Traditional methods, such as molecular dynamics, sample conformations via computationally expensive simulations. Recently, machine learning…

Machine Learning · Computer Science 2021-04-01 Minkai Xu , Shitong Luo , Yoshua Bengio , Jian Peng , Jian Tang

Deep generative models parametrised by neural networks have recently started to provide accurate results in modelling natural images. In particular, generative adversarial networks provide an unsupervised solution to this problem. In this…

High Energy Physics - Experiment · Physics 2018-11-27 Pasquale Musella , Francesco Pandolfi

This paper investigates the intriguing question of whether we can create learning algorithms that automatically generate training data, learning environments, and curricula in order to help AI agents rapidly learn. We show that such…

Machine Learning · Computer Science 2019-12-18 Felipe Petroski Such , Aditya Rawal , Joel Lehman , Kenneth O. Stanley , Jeff Clune

Generative Adversarial Networks (GANs) have become predominant in image generation tasks. Their success is attributed to the training regime which employs two models: a generator G and discriminator D that compete in a minimax zero sum…

Machine Learning · Computer Science 2020-11-25 Ariel Ruiz-Garcia , Ibrahim Almakky , Vasile Palade , Luke Hicks

In order to design a more potent and effective chemical entity, it is essential to identify molecular structures with the desired chemical properties. Recent advances in generative models using neural networks and machine learning are being…

Machine Learning · Computer Science 2020-09-30 Harshdeep Singh , Nicholas McCarthy , Qurrat Ul Ain , Jeremiah Hayes

Designing molecular structures with desired chemical properties is an essential task in drug discovery and material design. However, finding molecules with the optimized desired properties is still a challenging task due to combinatorial…

Biomolecules · Quantitative Biology 2023-02-02 Masatsugu Yamada , Mahito Sugiyama

Generative adversarial networks (GANs) have achieved remarkable success with realistic tasks such as creating realistic images, texts, and audio. Combining GANs and quantum computing, quantum GANs are thought to have an exponential…

Quantum Physics · Physics 2024-12-04 Haoran Ma , Liao Ye , Fanjie Ruan , Zichao Zhao , Maohui Li , Yuehai Wang , Jianyi Yang

Deep generative models, such as generative adversarial networks (GANs), are pivotal in discovering novel drug-like candidates via de novo molecular generation. However, traditional character-wise tokenizers often struggle with identifying…

Machine Learning · Computer Science 2024-10-01 Huidong Tang , Chen Li , Yasuhiko Morimoto

We study a fundamental problem in structure-based drug design -- generating molecules that bind to specific protein binding sites. While we have witnessed the great success of deep generative models in drug design, the existing methods are…

Biomolecules · Quantitative Biology 2022-11-15 Shitong Luo , Jiaqi Guan , Jianzhu Ma , Jian Peng

This study presents a novel method combining Graph Neural Networks (GNNs) and Generative Adversarial Networks (GANs) for generating packet-level header traces. By incorporating word2vec embeddings, this work significantly mitigates the…

Networking and Internet Architecture · Computer Science 2024-09-04 Zhen Xu

Generative AI has the potential to revolutionize drug discovery. Yet, despite recent advances in deep learning, existing models cannot generate molecules that satisfy all desired physicochemical properties. Herein, we describe IDOLpro, a…

Chemical Physics · Physics 2025-04-29 Amit Kadan , Kevin Ryczko , Erika Lloyd , Adrian Roitberg , Takeshi Yamazaki

"How to evaluate the de novo designs proposed by a generative model?" Despite the transformative potential of generative deep learning in drug discovery, this seemingly simple question has no clear answer. The absence of standardized…

Biomolecules · Quantitative Biology 2025-11-14 Rıza Özçelik , Francesca Grisoni

Drug discovery is a complex, resource-intensive process requiring significant time and cost to bring new medicines to patients. Many generative models aim to accelerate drug discovery, but few produce synthetically accessible molecules.…

Machine Learning · Computer Science 2025-01-30 Zygimantas Jocys , Zhanxing Zhu , Henriette M. G. Willems , Katayoun Farrahi

De novo molecular design attempts to search over the chemical space for molecules with the desired property. Recently, deep learning has gained considerable attention as a promising approach to solve the problem. In this paper, we propose…

Quantitative Methods · Quantitative Biology 2020-10-28 Sungsoo Ahn , Junsu Kim , Hankook Lee , Jinwoo Shin

There are plenty of problems where the data available is scarce and expensive. We propose a generator of semi-artificial data with similar properties to the original data which enables development and testing of different data mining…

Machine Learning · Statistics 2020-07-21 Marko Robnik-Šikonja

Generating molecules with desired biological activities has attracted growing attention in drug discovery. Previous molecular generation models are designed as chemocentric methods that hardly consider the drug-target interaction, limiting…

Machine Learning · Computer Science 2022-10-24 Cheng Tan , Zhangyang Gao , Stan Z. Li

Graph convolutional networks (GCNs) have gained popularity due to high performance achievable on several downstream tasks including node classification. Several architectural variants of these networks have been proposed and investigated…

Machine Learning · Computer Science 2020-04-09 Rahul Ragesh , Sundararajan Sellamanickam , Vijay Lingam , Arun Iyer

Plasmonic nanocavities are molecule-nanoparticle junctions that offer a promising approach to upconvert terahertz radiation into visible or near-infrared light, enabling nanoscale detection at room temperature. However, the identification…