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In this paper we explore the power of geometry to overcome the limitations of non-cooperative self-assembly. We define a generalization of the abstract Tile Assembly Model (aTAM), such that a tile system consists of a collection of…

Emerging Technologies · Computer Science 2014-08-20 Sándor P. Fekete , Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers , Robert T. Schweller

Using logic gates is the traditional way of designing logic circuits. However, most of the minimization algorithms concern a limited set of gates (complete sets), like sum of products, exclusive-or sum of products, NAND gates, NOR gates…

Hardware Architecture · Computer Science 2021-05-18 A. C. Dimopoulos , C. Pavlatos , G. Papakonstantinou

A function defined on the Boolean hypercube is $k$-Fourier-sparse if it has at most $k$ nonzero Fourier coefficients. For a function $f: \mathbb{F}_2^n \rightarrow \mathbb{R}$ and parameters $k$ and $d$, we prove a strong upper bound on the…

Data Structures and Algorithms · Computer Science 2015-04-08 Ishay Haviv , Oded Regev

The construction of quantum computers is based on the synthesis of low-cost quantum circuits. The quantum circuit of any Boolean function expressed in a Positive Polarity Reed-Muller $PPRM$ expansion can be synthesized using…

Quantum Physics · Physics 2024-07-09 Taghreed Ahmed , Ahmed Younes , and Islam Elkabani

Cantor's diagonal method is traditionally used to prove the uncountability of the set of all infinite binary sequences. This paper analyzes the expressive limits of this method. It is shown that under any constructive application --…

General Mathematics · Mathematics 2025-05-28 Stanislav Semenov

We introduce methods to count and enumerate all maximal independent, all maximum independent sets, and all independent sets in threshold graphs and k-threshold graphs. Within threshold graphs and k-threshold graphs independent sets…

Data Structures and Algorithms · Computer Science 2017-10-26 Frank Gurski , Carolin Rehs

In this paper, we study the structure of the set of tilings produced by any given tile-set. For better understanding this structure, we address the set of finite patterns that each tiling contains. This set of patterns can be analyzed in…

Other Computer Science · Computer Science 2008-02-21 Alexis Ballier , Bruno Durand , Emmanuel Jeandel

Gottesman-Knill theorem states that computations on stabilizer circuits can be simulated on a classical computer, conventional simulation algorithms extensively use linear algebra over bit strings. For instance, given a non-adaptive…

Quantum Physics · Physics 2025-11-10 Vsevolod I. Yashin

The connection between self-assembly and computation suggests that a shape can be considered the output of a self-assembly ``program,'' a set of tiles that fit together to create a shape. It seems plausible that the size of the smallest…

Computational Complexity · Computer Science 2008-06-22 David Soloveichik , Erik Winfree

The ability to design and synthesize ever more complicated colloidal particles opens the possibility of self-assembling a zoo of complex structures, including those with one or more self-limited length scales. An undesirable feature of…

Soft Condensed Matter · Physics 2022-03-02 Thomas E. Videbæk , Huang Fang , Daichi Hayakawa , Botond Tyukodi , Michael F. Hagan , W. Benjamin Rogers

Self-sustaining nonlinear oscillators of practically any type can function as latches and registers if Boolean logic states are represented physically as the phase of oscillatory signals. Combinational operations on such phase-encoded logic…

Emerging Technologies · Computer Science 2017-03-09 Jaijeet Roychowdhury

Boolean functions and binary sequences are main tools used in cryptography. In this work, we introduce a new bijection between the set of Boolean functions and the set of binary sequences with period a power of two. We establish a…

Cryptography and Security · Computer Science 2026-05-01 S. D. Cardell , A. Fúster-Sabater , V. Requena , M. Beltrá

Winfree's abstract Tile Assembly Model (aTAM) is a model of molecular self-assembly of DNA complexes known as tiles, which float freely in solution and attach one at a time to a growing "seed" assembly based on specific binding sites on…

Computational Complexity · Computer Science 2015-03-17 Ho-Lin Chen , David Doty , Shinnosuke Seki

We study Boolean functions of an arbitrary number of input variables that can be realized by simple iterative constructions based on constant-size primitives. This restricted type of construction needs little global coordination or control…

Neural and Evolutionary Computing · Computer Science 2016-06-16 Christos Papadimitrou , Samantha Petti , Santosh Vempala

Bell's theorem implies that the outcomes of local measurements on two maximally entangled systems cannot be simulated without classical communication between the parties. The communication cost is finite for n Bell states, but it grows…

Quantum Physics · Physics 2011-10-17 Alberto Montina

We numerically investigate the statement that local random quantum circuits acting on n qubits composed of polynomially many nearest neighbour two-qubit gates form an approximate unitary poly(n)-design [F.G.S.L. Brandao et al.,…

The recently introduced Thermodynamic Binding Networks (TBN) model was developed with the purpose of studying self-assembling systems by focusing on their thermodynamically favorable final states, and ignoring the kinetic pathways through…

Emerging Technologies · Computer Science 2018-02-09 Cameron Chalk , Jacob Hendricks , Matthew J. Patitz , Michael Sharp

Algorithmic tools for graphs of small treewidth are used to address questions in complexity theory. For both arithmetic and Boolean circuits, it is shown that any circuit of size $n^{O(1)}$ and treewidth $O(\log^i n)$ can be simulated by a…

Computational Complexity · Computer Science 2015-05-14 Maurice Jansen , Jayalal Sarma M. N

In this paper, we explicitly construct a large class of symmetric Boolean functions on $2k$ variables with algebraic immunity not less than $d$, where integer $k$ is given arbitrarily and $d$ is a given suffix of $k$ in binary…

Cryptography and Security · Computer Science 2011-10-19 Yuan Li , Hui Wang , Haibin Kan

We consider the power of Boolean circuits with MOD$_{6}$ gates. First, we introduce a few basic notions of computational complexity, and describe the standard models with which we study the complexity of problems. We then define the model…

Computational Complexity · Computer Science 2018-10-15 Daniel J. Saunders
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