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Recurrent Neural Networks (RNNs) are frequently used to model aspects of brain function and structure. In this work, we trained small fully-connected RNNs to perform temporal and flow control tasks with time-varying stimuli. Our results…

Neurons and Cognition · Quantitative Biology 2023-06-29 Cecilia Jarne , Rodrigo Laje

Task-based modeling with recurrent neural networks (RNNs) has emerged as a popular way to infer the computational function of different brain regions. These models are quantitatively assessed by comparing the low-dimensional neural…

Neurons and Cognition · Quantitative Biology 2019-12-06 Niru Maheswaranathan , Alex H. Williams , Matthew D. Golub , Surya Ganguli , David Sussillo

Much of the information the brain processes and stores is temporal in nature - a spoken word or a handwritten signature, for example, is defined by how it unfolds in time. However, it remains unclear how neural circuits encode complex…

Neurons and Cognition · Quantitative Biology 2017-08-15 Vishwa Goudar , Dean Buonomano

Can neural networks learn goal-directed behaviour using similar strategies to the brain, by combining the relationships between the current state of the organism and the consequences of future actions? Recent work has shown that recurrent…

Neurons and Cognition · Quantitative Biology 2021-01-21 Justin Jude , Matthias H. Hennig

Encoding models are used for predicting brain activity in response to sensory stimuli with the objective of elucidating how sensory information is represented in the brain. Encoding models typically comprise a nonlinear transformation of…

Neurons and Cognition · Quantitative Biology 2017-03-13 Umut Güçlü , Marcel A. J. van Gerven

Neural circuits comprise multiple interconnected regions, each with complex dynamics. The interplay between local and global activity is thought to underlie computational flexibility, yet the structure of multiregion neural activity and its…

Neurons and Cognition · Quantitative Biology 2025-01-09 David G. Clark , Manuel Beiran

The human brain is composed of distinct regions that are each associated with particular functions and distinct propensities for the control of neural dynamics. However, the relation between these functions and control profiles is poorly…

Neurons and Cognition · Quantitative Biology 2020-06-02 Evelyn Tang , Harang Ju , Graham L. Baum , David R. Roalf , Theodore D. Satterthwaite , Fabio Pasqualetti , Danielle S. Bassett

Neural systems process information across a broad range of intrinsic timescales, both within and across cortical areas. While such diversity is a hallmark of biological networks, its computational role in nonlinear information processing…

Neurons and Cognition · Quantitative Biology 2025-06-10 Tomoki Kurikawa

Recurrent Neural Networks (RNNs) were recently successfully used to model the way neural activity drives task-related behavior in animals, operating under the implicit assumption that the obtained solutions are universal. Observations in…

Neurons and Cognition · Quantitative Biology 2021-11-19 Elia Turner , Kabir Dabholkar , Omri Barak

Neural processes have recently emerged as a class of powerful neural latent variable models that combine the strengths of neural networks and stochastic processes. As they can encode contextual data in the network's function space, they…

Machine Learning · Computer Science 2021-12-03 Jiayi Shen , Xiantong Zhen , Marcel Worring , Ling Shao

We propose the use of recurrent neural networks for classifying phases of matter based on the dynamics of experimentally accessible observables. We demonstrate this approach by training recurrent networks on the magnetization traces of two…

Disordered Systems and Neural Networks · Physics 2018-08-22 Evert van Nieuwenburg , Eyal Bairey , Gil Refael

Understanding how brain networks learn and manage multiple tasks simultaneously is of interest in both neuroscience and artificial intelligence. In this regard, a recent research thread in theoretical neuroscience has focused on how…

Neurons and Cognition · Quantitative Biology 2024-08-05 Giacomo Vedovati , ShiNung Ching

Linearization of the dynamics of recurrent neural networks (RNNs) is often used to study their properties. The same RNN dynamics can be written in terms of the ``activations" (the net inputs to each unit, before its pointwise nonlinearity)…

Machine Learning · Computer Science 2023-09-11 Marino Pagan , Adrian Valente , Srdjan Ostojic , Carlos D. Brody

Decades of research on the neural code underlying spatial navigation have revealed a diverse set of neural response properties. The Entorhinal Cortex (EC) of the mammalian brain contains a rich set of spatial correlates, including grid…

Neurons and Cognition · Quantitative Biology 2018-05-11 Christopher J. Cueva , Xue-Xin Wei

As a person learns a new skill, distinct synapses, brain regions, and circuits are engaged and change over time. In this paper, we develop methods to examine patterns of correlated activity across a large set of brain regions. Our goal is…

Neurons and Cognition · Quantitative Biology 2013-10-31 Danielle S. Bassett , Nicholas F. Wymbs , M. Puck Rombach , Mason A. Porter , Peter J. Mucha , Scott T. Grafton

In order to comprehend and enhance models that describes various brain regions is important to study the dynamics of trained recurrent neural networks. Including Dales law in such models usually presents several challenges. However, this is…

Neurons and Cognition · Quantitative Biology 2023-04-11 Cecilia Jarne , Mariano Caruso

Recurrent neural networks (RNNs) trained on neuroscience-inspired tasks offer powerful models of brain computation. However, typical training paradigms rely on open-loop, supervised settings, whereas real-world learning unfolds in…

Machine Learning · Computer Science 2025-11-07 Yoav Ger , Omri Barak

The human visual system is an intricate network of brain regions that enables us to recognize the world around us. Despite its abundant lateral and feedback connections, object processing is commonly viewed and studied as a feedforward…

Neurons and Cognition · Quantitative Biology 2019-10-09 Tim C Kietzmann , Courtney J Spoerer , Lynn Sörensen , Radoslaw M Cichy , Olaf Hauk , Nikolaus Kriegeskorte

How do humans and other animals learn new tasks? A wave of brain recording studies has investigated how neural representations change during task learning, with a focus on how tasks can be acquired and coded in ways that minimise mutual…

Neurons and Cognition · Quantitative Biology 2022-10-11 Timo Flesch , Andrew Saxe , Christopher Summerfield

Recent experiments in neuroscience reveal that task-relevant variables are often encoded in approximately orthogonal subspaces of neural population activity. These disentangled, or abstract, representations have been observed in multiple…

Neurons and Cognition · Quantitative Biology 2026-03-16 Bin Wang , W. Jeffrey Johnston , Stefano Fusi
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