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This half day workshop explores challenges in data search, with a particular focus on data on the web. We want to stimulate an interdisciplinary discussion around how to improve the description, discovery, ranking and presentation of…

Other Computer Science · Computer Science 2018-05-31 Paul Groth , Laura Koesten , Philipp Mayr , Maarten de Rijke , Elena Simperl

High throughput genome sequencing technologies such as RNA-Seq and Microarray have the potential to transform clinical decision making and biomedical research by enabling high-throughput measurements of the genome at a granular level.…

The internet has had a dramatic effect on the healthcare industry, allowing documents to be saved, shared, and managed digitally. This has made it easier to locate and share important data, improving patient care and providing more…

Computation and Language · Computer Science 2022-12-06 Raghav Jain , Anubhav Jangra , Sriparna Saha , Adam Jatowt

The real-world implementation of federated learning is complex and requires research and development actions at the crossroad between different domains ranging from data science, to software programming, networking, and security. While…

The overwhelming amount of available scholarly literature in the life sciences poses significant challenges to scientists wishing to keep up with important developments related to their research, but also provides a useful resource for the…

Quantitative Methods · Quantitative Biology 2011-03-29 Huijun Wang , Ying Ding , Jie Tang , Xiao Dong , Bing He , Judy Qiu , David J. Wild

Data visualization techniques proffer efficient means to organize and present data in graphically appealing formats, which not only speeds up the process of decision making and pattern recognition but also enables decision-makers to fully…

Digital Libraries · Computer Science 2020-09-29 Shashwat Aggarwal , Ramesh Singh

Biomedical research yields a wealth of information, much of which is only accessible through the literature. Consequently, literature search is an essential tool for building on prior knowledge in clinical and biomedical research. Although…

Information Retrieval · Computer Science 2024-04-10 Qiao Jin , Robert Leaman , Zhiyong Lu

Structuring medical data in France remains a challenge mainly because of the lack of medical data due to privacy concerns and the lack of methods and approaches on processing the French language. One of these challenges is structuring…

Computation and Language · Computer Science 2021-12-22 Azzam Alwan , Maayane Attias , Larry Rubin , Adnan El Bakri

Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproducing published results, either experimental data or…

Molecular Networks · Quantitative Biology 2017-06-19 Kai-Wen Liang , Qinsi Wang , Cheryl Telmer , Divyaa Ravichandran , Peter Spirtes , Natasa Miskov-Zivanov

Public libraries play a crucial role in disseminating knowledge to society. However, most of their users do not have the specialized knowledge to understand the new research findings. Providing plain language summaries (PLSs) in public…

Information Retrieval · Computer Science 2023-08-01 Behrooz Rasuli

With large volumes of health care data comes the research area of computational phenotyping, making use of techniques such as machine learning to describe illnesses and other clinical concepts from the data itself. The "traditional"…

Machine Learning · Statistics 2016-12-30 Chris Hodapp

In biomedical applications of machine learning, relevant information often has a rich structure that is not easily encoded as real-valued predictors. Examples of such data include DNA or RNA sequences, gene sets or pathways, gene…

Genomics · Quantitative Biology 2019-10-16 Jake Crawford , Casey S. Greene

Social multimedia users are increasingly sharing all kinds of data about the world. They do this for their own reasons, not to provide data for field studies-but the trend presents a great opportunity for scientists. The Yahoo Flickr…

Electronic medical data sharing between stakeholders, such as patients, doctors, and researchers, can promote more effective medical treatment collaboratively. These sensitive and private data should only be accessed by authorized users.…

Software Engineering · Computer Science 2019-04-25 Chunmiao Li , Yang Cao , Zhenjiang Hu , Masatoshi Yoshikawa

In the recent past, electronic health records and distributed data networks emerged as a viable resource for medical and scientific research. As the use of confidential patient information from such sources become more common, maintaining…

Applications · Statistics 2016-03-18 Paramita Saha-Chaudhuri

The broad sharing of research data is widely viewed as of critical importance for the speed, quality, accessibility, and integrity of science. Despite increasing efforts to encourage data sharing, both the quality of shared data, and the…

Digital Libraries · Computer Science 2022-08-30 William Dempsey , Ian Foster , Scott Fraser , Carl Kesselman

Social media data has been increasingly used to study biomedical and health-related phenomena. From cohort level discussions of a condition to planetary level analyses of sentiment, social media has provided scientists with unprecedented…

Computers and Society · Computer Science 2020-09-17 Rion Brattig Correia , Ian B. Wood , Johan Bollen , Luis M. Rocha

There is a complex correlation among the data of scientific papers. The phenomenon reveals the data characteristics, laws, and correlations contained in the data of scientific and technological papers in specific fields, which can realize…

Digital Libraries · Computer Science 2022-04-26 Jie Song , Meiyu Liang , Zhe Xue , Feifei Kou , Ang Li

The growing need to manage and exploit the proliferation of online data sources is opening up new opportunities for bringing people closer to the resources they need. For instance, consider a recommendation service through which researchers…

Information Retrieval · Computer Science 2011-06-02 C. Basu , W. W. Cohen , H. Hirsh , C. Nevill-Manning

This article offers a short guide to the steps scientists can take to ensure that their data and associated analyses continue to be of value and to be recognized. In just the past few years, hundreds of scholarly papers and reports have…