Related papers: Exact-$2$-Relation Graphs
\noindent A paired coalition in a graph $G=(V,E)$ consists of two disjoint sets of vertices $V_1$ and $V_2$, neither of which is a paired dominating set but whose union $V_1 \cup V_2$ is a paired dominating set. A paired coalition partition…
This paper studies the problem of matching two complete graphs with edge weights correlated through latent geometries, extending a recent line of research on random graph matching with independent edge weights to geometric models.…
Best match graphs (BMG) are a key intermediate in graph-based orthology detection and contain a large amount of information on the gene tree. We provide a near-cubic algorithm to determine whether a BMG is binary-explainable, i.e., whether…
THIS IS A CORRECTED VERSION INCLUDING AN APPENDED CORRIGENDUM. Best match graphs arise naturally as the first processing intermediate in algorithms for orthology detection. Let $T$ be a phylogenetic (gene) tree $T$ and $\sigma$ an…
Given a tree and a set P of non-trivial simple paths on it, VPT(P) is the VPT graph (i.e. the vertex intersection graph) of the paths P, and EPT(P) is the EPT graph (i.e. the edge intersection graph) of P. These graphs have been extensively…
The total reciprocal edge-eccentricity is a novel graph invariant with vast potential in structure activity/property relationships. This graph invariant displays high discriminating power with respect to both biological activity and…
A graph $G$ is \emph{nonsingular (singular)} if its adjacency matrix $A(G)$ is nonsingular (singular). In this article, we consider the nonsingularity of block graphs, i.e., graphs in which every block is a clique. Extending the problem, we…
The presented material is devoted to the equivalent conversion from the vertex graphs to the edge graphs. We suggest that the proved theorems solve the problem of the isomorphism of graphs, the problem of the graph's enumeration with the…
Horizontal gene transfer is an important contributor to evolution. According to Walter M.\ Fitch, two genes are xenologs if they are separated by at least one HGT. More formally, the directed Fitch graph has a set of genes is its vertices,…
Tree representations of (sets of) symmetric binary relations, or equivalently edge-colored undirected graphs, are of central interest, e.g.\ in phylogenomics. In this context symbolic ultrametrics play a crucial role. Symbolic ultrametrics…
For a graph $G=(V,E)$, its exact-distance square, $G^{[\sharp 2]}$, is the graph with vertex set $V$ and with an edge between vertices $x$ and $y$ if and only if $x$ and $y$ have distance (exactly) $2$ in $G$. The graph $G$ is an…
We equip the edges of a deterministic graph $H$ with independent but not necessarily identically distributed weights and study a generalized version of matchings (i.e. a set of vertex disjoint edges) in $H$ satisfying the property that…
Temporal graphs are graphs whose topology is subject to discrete changes over time. Given a static underlying graph $G$, a temporal graph is represented by assigning a set of integer time-labels to every edge $e$ of $G$, indicating the…
The status of a vertex $x$ in a graph is the sum of the distances between $x$ and all other vertices. Let $G$ be a connected graph. The status sequence of $G$ is the list of the statuses of all vertices arranged in nondecreasing order. $G$…
Reciprocal best match graphs (RBMGs) are vertex colored graphs whose vertices represent genes and the colors the species where the genes reside. Edges identify pairs of genes that are most closely related with respect to an underlying…
A graph $G$ is a $B_0$-VPG graph if one can associate a path on a rectangular grid with each vertex such that two vertices are adjacent if and only if the corresponding paths intersect at at least one grid-point. A graph $G$ is a contact…
We show that P2T - the problem of deciding whether the edge set of a simple graph can be partitioned into two trees or not - is NP-complete.
Let $\Gamma$ be a finite, undirected, connected, simple graph. We say that a matching $\mathcal{M}$ is a \textit{permutable $m$-matching} if $\mathcal{M}$ contains $m$ edges and the subgroup of $\text{Aut}(\Gamma)$ that fixes the matching…
An edge-colored graph $G$ is conflict-free connected if any two of its vertices are connected by a path which contains a color used on exactly one of its edges. The conflict-free connection number of a connected graph $G$, denoted by…
Horizontal gene transfer events partition a gene tree $T$ and thus, its leaf set into subsets of genes whose evolutionary history is described by speciation and duplication events alone. Indirect phylogenetic methods can be used to infer…