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A complexity-theoretic approach to studying biological networks is proposed. A simple graph representation is used where molecules (DNA, RNA, proteins and chemicals) are vertices and relations between them are directed and signed…

Social and Information Networks · Computer Science 2018-04-25 Ali Atiia , François Major , Jérôme Waldispühl

We proposed an evolving network model constituted by the same nodes but different edges. The competition between nodes and different links were introduced. Scale free properties have been found in this model by continuum theory. Different…

Statistical Mechanics · Physics 2013-05-29 Jie Sun , Yizhi Ge , Sheng Li

Networks are mathematical structures that are universally used to describe a large variety of complex systems such as the brain or the Internet. Characterizing the geometrical properties of these networks has become increasingly relevant…

Physics and Society · Physics 2015-05-26 Zhihao Wu , Giulia Menichetti , Christoph Rahmede , Ginestra Bianconi

The mathematical framework of multiplex networks has been increasingly realized as a more suitable framework for modelling real-world complex systems. In this work, we investigate the optimization of synchronizability in multiplex networks…

Adaptation and Self-Organizing Systems · Physics 2017-05-24 Sanjiv K. Dwivedi , Murilo S. Baptista , Sarika Jalan

Using a simple model with link removals as well as link additions, we show that an evolving network is scale free with a degree exponent in the range of (2, 4]. We then establish a relation between the network evolution and a set of…

Mathematical Physics · Physics 2007-05-23 Dinghua Shi , Liming Liu , Xiang Zhu , Huijie Zhou , Binbin Wang

Complex network theory provides a unifying framework for the study of structured dynamic systems. The current literature emphasizes a widely reported phenomenon of intermittent interaction among network vertices. In this paper, we introduce…

Social and Information Networks · Computer Science 2025-02-17 Ziyan Zeng , Minyu Feng , Pengfei Liu , Jurgen Kurths

A common theme among the proposed models for network epidemics is the assumption that the propagating object, i.e., a virus or a piece of information, is transferred across the nodes without going through any modification or evolution.…

Physics and Society · Physics 2019-11-05 Rashad Eletreby , Yong Zhuang , Kathleen M. Carley , Osman Yağan , H. Vincent Poor

Traditional network generation models attempt to replicate global structural properties (degree distribution, average distance, clustering coefficient, communities, etc.) through synthetic link formation mechanisms such as triadic closure…

Social and Information Networks · Computer Science 2013-10-14 Erick Stattner , Martine Collard

In network evolution, the effect of aging is universal: in scientific collaboration network, scientists have a finite time span of being active; in movie actors network, once popular stars are retiring from stage; devices on the Internet…

Statistical Mechanics · Physics 2009-11-10 Han Zhu , Xin-Ran Wang , Jian-Yang Zhu

Although the origin of the fat-tail characteristic of the degree distribution in complex networks has been extensively researched, the underlying cause of the degree distribution characteristic across the complete range of degrees remains…

Physics and Society · Physics 2023-11-07 Bin Zhou , Petter Holme , Zaiwu Gong , Choujun Zhan , Yao Huang , Xin Lu , Xiangyi Meng

Phylogenetic networks generalize phylogenetic trees by allowing the modelization of events of reticulate evolution. Among the different kinds of phylogenetic networks that have been proposed in the literature, the subclass of binary…

Data Structures and Algorithms · Computer Science 2020-07-01 Gabriel Cardona , Joan Carles Pons , Celine Scornavacca

In this paper we analyze the effect of a non-trivial topology on the dynamics of the so-called Naming Game, a recently introduced model which addresses the issue of how shared conventions emerge spontaneously in a population of agents. We…

Statistical Mechanics · Physics 2007-05-23 Luca Dall'Asta , Andrea Baronchelli , Alain Barrat , Vittorio Loreto

At any moment in time, evolution is faced with a formidable challenge: refining the already highly optimised design of biological species, a feat accomplished through all preceding generations. In such a scenario, the impact of random…

Populations and Evolution · Quantitative Biology 2024-02-20 Alessandro Fontana , Marios Kyriazis

Ever since the Barab\'{a}si-Albert (BA) scale-free network has been proposed, network modeling has been studied intensively in light of the network growth and the preferential attachment (PA). However, numerous real systems are featured…

Social and Information Networks · Computer Science 2025-11-25 Yuhan Li , Minyu Feng , Jürgen Kurths

We found that models of evolving random networks exhibit dynamic scaling similar to scaling of growing surfaces. It is demonstrated by numerical simulations of two variants of the model in which nodes are added as well as removed [Phys.…

Statistical Mechanics · Physics 2009-11-07 Miroslav Kotrla , Frantisek Slanina , Jakub Steiner

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

Neurons and Cognition · Quantitative Biology 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

We introduce a new mechanism of connectivity evolution in networks to account for the emergence of scale-free behavior. The mechanism works on a fixed set of nodes and promotes growth from a minimally connected initial topology by the…

Statistical Mechanics · Physics 2007-05-23 Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza

We propose a novel model-selection method for dynamic networks. Our approach involves training a classifier on a large body of synthetic network data. The data is generated by simulating nine state-of-the-art random graph models for dynamic…

Social and Information Networks · Computer Science 2024-05-28 Lourens Touwen , Doina Bucur , Remco van der Hofstad , Alessandro Garavaglia , Nelly Litvak

To provide a phenomenological theory for the various interesting transitions in restructuring networks we employ a statistical mechanical approach with detailed balance satisfied for the transitions between topological states. This enables…

Statistical Mechanics · Physics 2007-05-23 Imre Derenyi , Illes Farkas , Gergely Palla , Tamas Vicsek

Real-world networks such as the Internet and WWW have many common traits. Until now, hundreds of models were proposed to characterize these traits for understanding the networks. Because different models used very different mechanisms, it…

Social and Information Networks · Computer Science 2014-09-02 Bojin Zheng , Hongrun Wu , Li Kuang , Jun Qin , Wenhua Du , Jianmin Wang , Deyi Li