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Hypergraphs naturally represent group interactions, which are omnipresent in many domains: collaborations of researchers, co-purchases of items, joint interactions of proteins, to name a few. In this work, we propose tools for answering the…

Social and Information Networks · Computer Science 2020-07-21 Geon Lee , Jihoon Ko , Kijung Shin

Motifs are distinctive recurring elements found in folklore that have significance as communicative devices in news, literature, press releases, and propaganda. Motifs concisely imply a large constellation of culturally-relevant…

Embedding static graphs in low-dimensional vector spaces plays a key role in network analytics and inference, supporting applications like node classification, link prediction, and graph visualization. However, many real-world networks…

Machine Learning · Computer Science 2021-07-23 Claudio D. T. Barros , Matheus R. F. Mendonça , Alex B. Vieira , Artur Ziviani

Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical…

Statistical Mechanics · Physics 2016-08-31 Reka Albert , Albert-Laszlo Barabasi

The study of motifs in networks can help researchers uncover links between the structure and function of networks in biology, sociology, economics, and many other areas. Empirical studies of networks have identified feedback loops,…

Physics and Society · Physics 2021-05-12 Alice C. Schwarze , Mason A. Porter

Higher-order graph clustering aims to partition the graph using frequently occurring subgraphs. Motif conductance is one of the most promising higher-order graph clustering models due to its strong interpretability. However, existing motif…

Computational Complexity · Computer Science 2024-06-12 Longlong Lin , Tao Jia , Zeli Wang , Jin Zhao , Rong-Hua Li

Many systems exhibit complex temporal dynamics due to the presence of different processes taking place simultaneously. An important task in such systems is to extract a simplified view of their time-dependent network of interactions.…

Physics and Society · Physics 2022-05-23 Alexandre Bovet , Jean-Charles Delvenne , Renaud Lambiotte

A $k$-motif (or graphlet) is a subgraph on $k$ nodes in a graph or network. Counting of motifs in complex networks has been a well-studied problem in network analysis of various real-word graphs arising from the study of social networks and…

Social and Information Networks · Computer Science 2020-04-02 Taha Sevim , Muhammet Selçuk Güvel , Lale Özkahya

Structure learning is a core problem in AI central to the fields of neuro-symbolic AI and statistical relational learning. It consists in automatically learning a logical theory from data. The basis for structure learning is mining…

Artificial Intelligence · Computer Science 2023-06-21 Jonathan Feldstein , Dominic Phillips , Efthymia Tsamoura

Networks are commonly used to define underlying interaction structures where infections, information, or other quantities may spread. Although the standard approach has been to aggregate all links into a static structure, some studies…

Physics and Society · Physics 2014-01-23 Luis Enrique Correa Rocha , Vincent D Blondel

Subgraph isomorphism, essential for pattern detection in large-scale graphs, faces scalability challenges in attribute-rich property graphs used in neuroscience, systems biology, and social network analysis. Traditional algorithms explore…

Data Structures and Algorithms · Computer Science 2025-07-08 Mohammad Dindoost , Oliver Alvarado Rodriguez , Bartosz Bryg , Ioannis Koutis , David A. Bader

Graph Neural Networks (GNNs) are a predominant method for graph representation learning. However, beyond subgraph frequency estimation, their application to network motif significance-profile (SP) prediction remains under-explored, with no…

Machine Learning · Computer Science 2025-07-11 Pedro C. Vieira , Miguel E. P. Silva , Pedro Manuel Pinto Ribeiro

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

Community discovery is one of the most studied problems in network science. In recent years, many works have focused on discovering communities in temporal networks, thus identifying dynamic communities. Interestingly, dynamic communities…

Social and Information Networks · Computer Science 2019-07-29 Remy Cazabet , Giulio Rossetti

Graphs are naturally used to describe the structures of various real-world systems in biology, society, computer science etc., where subgraphs or motifs as basic blocks play an important role in function expression and information…

Social and Information Networks · Computer Science 2021-02-11 Jinhuan Wang , Pengtao Chen , Bin Ma , Jiajun Zhou , Zhongyuan Ruan , Guanrong Chen , Qi Xuan

How does the small-scale topological structure of an airline network behave as the network evolves? To address this question, we study the dynamic properties of small undirected subgraphs using 15 years of data on Southwest Airlines'…

Social and Information Networks · Computer Science 2020-10-28 Marius Agasse-Duval , Steve Lawford

We present an algorithm to compute path homology for simple digraphs, and use it to topologically analyze various small digraphs en route to an analysis of complex temporal networks which exhibit such digraphs as underlying motifs. The…

Social and Information Networks · Computer Science 2021-01-15 Samir Chowdhury , Steve Huntsman , Matvey Yutin

Neural networks for structured data like graphs have been studied extensively in recent years. To date, the bulk of research activity has focused mainly on static graphs. However, most real-world networks are dynamic since their topology…

Machine Learning · Computer Science 2020-03-03 Changmin Wu , Giannis Nikolentzos , Michalis Vazirgiannis

Network sampling is an indispensable tool for understanding features of large complex networks where it is practically impossible to search over the entire graph. In this paper, we develop a framework for statistical inference for counting…

Statistics Theory · Mathematics 2024-12-24 Bhaswar B. Bhattacharya , Sayan Das , Sumit Mukherjee

This paper introduces a generalization of Convolutional Neural Networks (CNNs) to graphs with irregular linkage structures, especially heterogeneous graphs with typed nodes and schemas. We propose a novel spatial convolution operation to…

Machine Learning · Computer Science 2019-07-23 Aravind Sankar , Xinyang Zhang , Kevin Chen-Chuan Chang