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Many machine learning models have been proposed to classify phenotypes from gene expression data. In addition to their good performance, these models can potentially provide some understanding of phenotypes by extracting explanations for…

Genomics · Quantitative Biology 2024-02-05 Myriam Bontonou , Anaïs Haget , Maria Boulougouri , Benjamin Audit , Pierre Borgnat , Jean-Michel Arbona

Ensemble learning is a powerful paradigm that has been usedin the top state-of-the-art machine learning methods like Random Forestsand XGBoost. Inspired by the success of such methods, we have devel-oped a new Genetic Programming method…

Neural and Evolutionary Computing · Computer Science 2020-01-22 Nuno M. Rodrigues , João E. Batista , Sara Silva

The search for interpretable reinforcement learning policies is of high academic and industrial interest. Especially for industrial systems, domain experts are more likely to deploy autonomously learned controllers if they are…

Artificial Intelligence · Computer Science 2018-04-05 Daniel Hein , Steffen Udluft , Thomas A. Runkler

Most commonly used non-linear machine learning methods are closed-box models, uninterpretable to humans. The field of explainable artificial intelligence (XAI) aims to develop tools to examine the inner workings of these closed boxes. An…

Machine Learning · Computer Science 2026-05-26 Lauri Seppäläinen , Mudong Guo , Kai Puolamäki

Choosing the most adequate kernel is crucial in many Machine Learning applications. Gaussian Process is a state-of-the-art technique for regression and classification that heavily relies on a kernel function. However, in the Gaussian…

Machine Learning · Computer Science 2019-10-15 Ibai Roman , Roberto Santana , Alexander Mendiburu , Jose A. Lozano

This paper presents a comprehensive theoretical investigation into the parameterized complexity of explanation problems in various machine learning (ML) models. Contrary to the prevalent black-box perception, our study focuses on models…

Artificial Intelligence · Computer Science 2025-11-06 Sebastian Ordyniak , Giacomo Paesani , Mateusz Rychlicki , Stefan Szeider

Explainable artificial intelligence (XAI) is an emerging new domain in which a set of processes and tools allow humans to better comprehend the decisions generated by black box models. However, most of the available XAI tools are often…

Machine Learning · Computer Science 2021-07-22 Zoumpolia Dikopoulou , Serafeim Moustakidis , Patrik Karlsson

Automatic programming, the task of generating computer programs compliant with a specification without a human developer, is usually tackled either via genetic programming methods based on mutation and recombination of programs, or via…

Artificial Intelligence · Computer Science 2021-02-09 Vadim Liventsev , Aki Härmä , Milan Petković

Natural language explanation (NLE) models aim at explaining the decision-making process of a black box system via generating natural language sentences which are human-friendly, high-level and fine-grained. Current NLE models explain the…

Computer Vision and Pattern Recognition · Computer Science 2022-03-11 Fawaz Sammani , Tanmoy Mukherjee , Nikos Deligiannis

The interpretability of deep neural networks has attracted increasing attention in recent years, and several methods have been created to interpret the "black box" model. Fundamental limitations remain, however, that impede the pace of…

Machine Learning · Computer Science 2023-12-05 Hao Xu , Yuntian Chen , Dongxiao Zhang

Artificial intelligence techniques are increasingly being applied to solve control problems, but often rely on black-box methods without transparent output generation. To improve the interpretability and transparency in control systems,…

Neural and Evolutionary Computing · Computer Science 2025-06-11 Sigur de Vries , Sander Keemink , Marcel van Gerven

Genetic Programming is an evolutionary algorithm that generates computer programs, or mathematical expressions, to solve complex problems. In this Guide, we demonstrate how to use Genetic Programming to develop surrogate models to mitigate…

With the rapid growth of generative AI in numerous applications, explainable AI (XAI) plays a crucial role in ensuring the responsible development and deployment of generative AI technologies. XAI has undergone notable advancements and…

Machine Learning · Computer Science 2025-01-22 Yen-Lung Huang , Ming-Hsi Weng , Hao-Tsung Yang

As the manufacturing industry advances with sensor integration and automation, the opaque nature of deep learning models in machine learning poses a significant challenge for fault detection and diagnosis. And despite the related predictive…

Artificial Intelligence · Computer Science 2024-06-11 Ahmed Maged , Salah Haridy , Herman Shen

Genetic programming (GP) has demonstrated strong effectiveness in evolving tree-structured heuristics for complex optimization problems. Yet, in dynamic and large-scale scenarios, the most effective heuristics are often highly complex,…

Machine Learning · Computer Science 2025-10-06 Meng Xu , Jiao Liu , Yew Soon Ong

Deep learning-based AI models have been extensively applied in genomics, achieving remarkable success across diverse applications. As these models gain prominence, there exists an urgent need for interpretability methods to establish…

Genomics · Quantitative Biology 2025-05-16 Chenyu Wang , Chaoying Zuo , Zihan Su , Yuhang Xing , Lu Li , Maojun Wang , Zeyu Zhang

Improving the interpretability of geospatial artificial intelligence (GeoAI) models has become critically important to open the "black box" of complex AI models, such as deep learning. This paper compares popular saliency map generation…

Computer Vision and Pattern Recognition · Computer Science 2023-03-20 Chia-Yu Hsu , Wenwen Li

Models can be built directly from input and output data trough a process known as system identification. The Nonlinear AutoRegressive with eXogenous inputs (NARMAX) models are among the most used mathematical representations in the area and…

Systems and Control · Electrical Eng. & Systems 2022-11-11 Henrique Carvalho de Castro , Bruno Henrique Groenner Barbosa

Graph Neural Networks (GNNs) achieve state-of-the-art performance in various graph-related tasks. However, the black-box nature often limits their interpretability and trustworthiness. Numerous explainability methods have been proposed to…

Machine Learning · Computer Science 2023-11-13 Jialin Chen , Kenza Amara , Junchi Yu , Rex Ying

There has recently been a surge of work in explanatory artificial intelligence (XAI). This research area tackles the important problem that complex machines and algorithms often cannot provide insights into their behavior and thought…

Artificial Intelligence · Computer Science 2019-02-05 Leilani H. Gilpin , David Bau , Ben Z. Yuan , Ayesha Bajwa , Michael Specter , Lalana Kagal