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Attractant-based trap networks targeting insects are ubiquitous worldwide. These networks have diverse targets, goals, and efficiencies, but all are constrained by practical considerations like cost and available lures. An important way to…

Quantitative Methods · Quantitative Biology 2021-10-25 Nicholas C Manoukis , Matthew P. Hill

System identification is a common tool for estimating (linear) plant models as a basis for model-based predictive control and optimization. The current challenges in process industry, however, ask for data-driven modelling techniques that…

Systems and Control · Computer Science 2018-02-06 Paul M. J. Van den Hof , Arne G. Dankers , Harm H. M. Weerts

Identifying the nodes that have the potential to influence the state of a network is a relevant question for many complex systems. In many applications it is often essential to test the ability of an individual node to control a specific…

Molecular Networks · Quantitative Biology 2020-12-08 Giulia Bassignana , Jennifer Fransson , Vincent Henry , Olivier Colliot , Violetta Zujovic , Fabrizio De Vico Fallani

Random Boolean networks (RBNs) are models of genetic regulatory networks. It is useful to describe RBNs as self-organizing systems to study how changes in the nodes and connections affect the global network dynamics. This article reviews…

Adaptation and Self-Organizing Systems · Physics 2010-09-24 Carlos Gershenson

Complex social systems are composed of interconnected individuals whose interactions result in group behaviors. Optimal control of a real-world complex system has many applications, including road traffic management, epidemic prevention,…

Systems and Control · Computer Science 2019-05-08 Wen Dong , Bo Liu , Fan Yang

Boolean networks with canalizing functions are used to model gene regulatory networks. In order to learn how such networks may behave under evolutionary forces, we simulate the evolution of a single Boolean network by means of an adaptive…

Populations and Evolution · Quantitative Biology 2011-11-09 Agnes Szejka , Barbara Drossel

We develop a general method to explore how the function performed by a biological network can constrain both its structural and dynamical network properties. This approach is orthogonal to prior studies which examine the functional…

Molecular Networks · Quantitative Biology 2009-11-13 Kai-Yeung Lau , Surya Ganguli , Chao Tang

Asynchronous Boolean networks are a type of discrete dynamical system in which each variable can take one of two states, and a single variable state is updated in each time step according to pre-selected rules. Boolean networks are popular…

Molecular Networks · Quantitative Biology 2024-10-08 Samuel Pastva , Kyu Hyong Park , Ondrej Huvar , Jordan C Rozum , Reka Albert

Random Boolean Network has been used to find out regulation patterns of genes in organism. his approach is very interesting to use in a game such as N Person PD. Here we assume that action is influenced by input in the form of choices of…

Disordered Systems and Neural Networks · Physics 2007-05-23 Hokky Situngkir , Deni Khanafiah

Controlling the global statuses of a network by its local dynamic parameters is an important issue, and it is difficult to obtain the direct solution for. The transformation method, which is originally used to control physical field by…

Networking and Internet Architecture · Computer Science 2011-12-01 Xiangyang Lu , Jin Hu , Ran Tao , Yue Wang

We present a novel, model-free, and data-driven methodology for controlling complex dynamical systems into previously unseen target states, including those with significantly different and complex dynamics. Leveraging a parameter-aware…

Chaotic Dynamics · Physics 2026-02-13 Daniel Köglmayr , Alexander Haluszczynski , Christoph Räth

Minimal trap spaces (MTSs) capture subspaces in which the Boolean dynamics is trapped, whatever the update mode. They correspond to the attractors of the most permissive mode. Due to their versatility, the computation of MTSs has recently…

Logic in Computer Science · Computer Science 2023-07-21 Sara Riva , Jean-Marie Lagniez , Gustavo Magaña López , Loïc Paulevé

We realize autonomous Boolean networks by using logic gates in their autonomous mode-of-operation on a field-programmable gate array. This allows us to implement time-continuous systems with complex dynamical behaviors that can be…

Adaptation and Self-Organizing Systems · Physics 2013-12-16 David P. Rosin , Damien Rontani , Daniel J. Gauthier , Eckehard Schöll

We study the spread of a novel state in a network, in the presence of an exogenous control. The considered controlled evolutionary dynamics is a non-homogeneous Markov process that describes the evolution of the states of all nodes in the…

Systems and Control · Electrical Eng. & Systems 2020-06-23 Lorenzo Zino , Giacomo Como , Fabio Fagnani

Boolean network (BN) is a simple model widely used to study complex dynamic behaviour of biological systems. Nonetheless, it might be difficult to gather enough data to precisely capture the behavior of a biological system into a set of…

Molecular Networks · Quantitative Biology 2020-09-02 Lubos Brim , Samuel Pastva , David Safranek , Eva Smijakova

Boolean networks model finite discrete dynamical systems with complex behaviours. The state of each component is determined by a Boolean function of the state of (a subset of) the components of the network. This paper addresses the…

Artificial Intelligence · Computer Science 2020-02-28 Stéphanie Chevalier , Christine Froidevaux , Loïc Paulevé , Andrei Zinovyev

Statistical properties of environments experienced by biological signaling systems in the real world change, which necessitate adaptive responses to achieve high fidelity information transmission. One form of such adaptive response is gain…

Molecular Networks · Quantitative Biology 2012-05-01 Ilya Nemenman

In automata networks, it is well known that the way entities update their states over time has a major impact on their dynamics. In particular, depending on the chosen update schedule, the underlying dynamical systems may exhibit more or…

Discrete Mathematics · Computer Science 2022-04-25 Jacques Demongeot , Sylvain Sené

This paper introduces a method to identify traps in molecular charge transport networks as obtained by multiscale modeling of organic semiconductors. Depending on the materials, traps can be defect-like single molecules or clusters of…

Computational Physics · Physics 2025-04-01 Zhongquan Chen , Pim van der Hoorn , Björn Baumeier

Boolean networks serve as discrete models of regulation and signaling in biological cells. Identifying the key controllers of such processes is important for understanding the dynamical systems and planning further analysis. Here we…

Molecular Networks · Quantitative Biology 2012-09-14 Fakhteh Ghanbarnejad , Konstantin Klemm
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