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Molecular conformer generation is a fundamental task in computational chemistry. Several machine learning approaches have been developed, but none have outperformed state-of-the-art cheminformatics methods. We propose torsional diffusion, a…

Chemical Physics · Physics 2023-03-02 Bowen Jing , Gabriele Corso , Jeffrey Chang , Regina Barzilay , Tommi Jaakkola

We estimate the distribution of random parameters in a distributed parameter model with unbounded input and output for the transdermal transport of ethanol in humans. The model takes the form of a diffusion equation with the input being the…

Optimization and Control · Mathematics 2018-08-14 Melike Sirlanci , Susan E. Luczak , Catharine E. Fairbairn , Dahyeon Kang , Ruoxi Pan , Xin Yu , I. G. Rosen

This paper presents a tractable model for analyzing non-coherent joint transmission base station (BS) cooperation, taking into account the irregular BS deployment typically encountered in practice. Besides cellular-network specific aspects…

Information Theory · Computer Science 2014-09-22 Ralph Tanbourgi , Sarabjot Singh , Jeffrey G. Andrews , Friedrich K. Jondral

In a recent paper it has been shown that to model a diffusive molecular communication (MC) channel with multiple fully absorbing (FA) receivers, these can be interpreted as sources of negative particles from the other receivers'…

Information Theory · Computer Science 2023-04-27 Fardad Vakilipoor , Abdulhamid N. M. Ansari , Maurizio Magarini

Molecular communication is a novel approach for data transmission between miniaturized devices, especially in contexts where electrical signals are to be avoided. The communication is based on sending molecules (or other particles) at nano…

Emerging Technologies · Computer Science 2023-08-08 Max Bartunik , Jens Kirchner , Oliver Keszocze

We design iterative receiver schemes for a generic wireless communication system by treating channel estimation and information decoding as an inference problem in graphical models. We introduce a recently proposed inference framework that…

Molecular Communications (MC) underpins signaling in biological systems, enabling information transfer through biochemical molecules. The prospect of engineering this natural communication mechanism has inspired the Internet of Bio-Nano…

Emerging Technologies · Computer Science 2023-05-12 Murat Kuscu

This paper proposes an effective phase diffusion method to analyze chemical exchange in nuclear magnetic resonance (NMR). The chemical exchange involves spin jumps around different sites where the spin angular frequencies vary, which leads…

Chemical Physics · Physics 2023-07-19 Guoxing Lin

As a powerful tool for characterizing cellular subpopulations and cellular heterogeneity, single cell RNA sequencing (scRNA-seq) technology offers advantages of high throughput and multidimensional analysis. However, the process of data…

Machine Learning · Computer Science 2024-11-19 Zhuorui Cui , Shengze Dong , Ding Liu

The problem of transport through nanochannels is one of the major questions in cell biology, with a wide range of applications. Brownian ratchets are fundamental in various biochemical processes, and are roughly divided into two categories:…

Soft Condensed Matter · Physics 2013-07-24 Anna Lappala , Alessio Zaccone , Eugene M. Terentjev

The design and analysis of communication systems typically rely on the development of mathematical models that describe the underlying communication channel. However, in some systems, such as molecular communication systems where chemical…

Signal Processing · Electrical Eng. & Systems 2018-02-23 Nariman Farsad , Andrea Goldsmith

Faced with the massive connection, sporadic transmission, and small-sized data packets in future cellular communication, a grant-free non-orthogonal random access (NORA) system is considered in this paper, which could reduce the access…

Information Theory · Computer Science 2019-10-10 Zhaoji Zhang , Ying Li , Chongwen Huang , Qinghua Guo , Chau Yuen , Yong Liang Guan

A biofilm is a microbial city. It consists of bacteria embedded in an extracellular polymeric substance (EPS) that functions as a protective barrier. Quorum sensing (QS) is a method of bacterial communication, where autoinducers (AIs)…

Signal Processing · Electrical Eng. & Systems 2024-08-15 Yanahan Paramalingam , Hamidreza Arjmandi , Freya Harrison , Tara Schiller , Adam Noel

Reliable quantum communication over hundreds of kilometers is a daunting yet necessary requirement for a quantum internet. To overcome photon loss, the deployment of quantum repeater stations between distant network nodes is necessary. A…

In the last few decades, the development of miniature biological sensors that can detect and measure different phenomena at the nanoscale has led to transformative disease diagnosis and treatment techniques. Among others, biofunctional…

Systems and Control · Computer Science 2017-12-05 Hongzhi Guo , Josep Miquel Jornet , Qiaoqiang Gan , Zhi Sun

Molecular communication is an expanding body of research. Recent advances in biology have encouraged using genetically engineered bacteria as the main component in the molecular communication. This has stimulated a new line of research that…

Information Theory · Computer Science 2012-09-13 Arash Einolghozati , Mohsen Sardari , Faramarz Fekr

Denoising diffusion bridge models (DDBMs) are a powerful variant of diffusion models for interpolating between two arbitrary paired distributions given as endpoints. Despite their promising performance in tasks like image translation, DDBMs…

Machine Learning · Computer Science 2025-05-01 Kaiwen Zheng , Guande He , Jianfei Chen , Fan Bao , Jun Zhu

In this paper, we study the bidirectional/two-way relaying of molecular communication and propose a relaying scheme with two time slots. Compared to the four-time-slot and three-time-slot schemes, the proposed two-time-slot scheme improves…

Emerging Technologies · Computer Science 2017-11-09 Md. Noor-A-Rahim , MD Nashid Anjum , Guan Yong Liang

In this paper, we consider abnormality detection via diffusive molecular communications (MCs) for a network consisting of several sensors and a fusion center (FC). If a sensor detects an abnormality, it injects into the medium a number of…

Information Theory · Computer Science 2017-03-30 Reza Mosayebi , Vahid Jamali , Nafiseh Ghoroghchian , Robert Schober , Masoumeh Nasiri-Kenari , Mahdieh Mehrabi

The convergence of communication and computation, along with the integration of machine learning and artificial intelligence, stand as key empowering pillars for the sixth-generation of communication systems (6G). This paper considers a…

Information Theory · Computer Science 2024-06-07 Robert-Jeron Reifert , Hayssam Dahrouj , Alaa Alameer Ahmad , Haris Gacanin , Aydin Sezgin
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