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Today we have a good theoretical understanding of the representational power of Graph Neural Networks (GNNs). For example, their limitations have been characterized in relation to a hierarchy of Weisfeiler-Lehman (WL) isomorphism tests.…

Machine Learning · Computer Science 2023-03-08 Mohammad Sadegh Akhondzadeh , Vijay Lingam , Aleksandar Bojchevski

We give an isomorphism test for graphs of Euler genus $g$ running in time $2^{O(g^4 \log g)}n^{O(1)}$. Our algorithm provides the first explicit upper bound on the dependence on $g$ for an fpt isomorphism test parameterized by the Euler…

Data Structures and Algorithms · Computer Science 2024-03-08 Daniel Neuen

Graphs possess exotic features like variable size and absence of natural ordering of the nodes that make them difficult to analyze and compare. To circumvent this problem and learn on graphs, graph feature representation is required. A good…

Machine Learning · Computer Science 2019-12-03 Edouard Pineau

This paper presents a new graph isomorphism invariant, called $\mathfrak{w}$-labeling, that can be used to design a polynomial-time algorithm for solving the graph isomorphism problem for various graph classes. For example, all…

Data Structures and Algorithms · Computer Science 2023-01-24 Alpár Jüttner , Péter Madarasi

A probabilistic version of the Weisfeiler-Leman algorithm for computing the coherent closure of a colored graph is suggested. The algorithm is Monte Carlo and runs in time $ O(n^{1+\omega}\log^2 n) $, where $ n $ is the number of vertices…

Computational Complexity · Computer Science 2021-12-28 Saveliy V. Skresanov

We study free scalar field theory on a graph, which gives rise to a modified version of discrete Green's function on a graph studied in \cite{CY}. We show that this gives rise to a graph invariant, which is closely related to the 2-dim…

Combinatorics · Mathematics 2015-06-18 An Huang , Shing-Tung Yau , Mei-Heng Yueh

Although recent advances in higher-order Graph Neural Networks (GNNs) improve the theoretical expressiveness and molecular property predictive performance, they often fall short of the empirical performance of models that explicitly use…

Machine Learning · Computer Science 2024-07-26 Tom Wollschläger , Niklas Kemper , Leon Hetzel , Johanna Sommer , Stephan Günnemann

For every odd prime power $q$, a family of pairwise nonisomorphic normal arc-transitive divisible design Cayley digraphs with isomorphic neighborhood designs over a Heisenberg group of order $q^3$ is constructed. It is proved that these…

Combinatorics · Mathematics 2024-11-11 Mikhail Muzychuk , Grigory Ryabov

Recently, subgraph GNNs have emerged as an important direction for developing expressive graph neural networks (GNNs). While numerous architectures have been proposed, so far there is still a limited understanding of how various design…

Machine Learning · Computer Science 2023-03-30 Bohang Zhang , Guhao Feng , Yiheng Du , Di He , Liwei Wang

We investigate the relationship between various isomorphism invariants for finite groups. Specifically, we use the Weisfeiler-Leman dimension (WL) to characterize, compare and quantify the effectiveness and complexity of invariants for…

Group Theory · Mathematics 2021-11-24 Jendrik Brachter , Pascal Schweitzer

Graph property detection aims to determine whether a graph exhibits certain structural properties, such as being Hamiltonian. Recently, learning-based approaches have shown great promise by leveraging data-driven models to detect graph…

Artificial Intelligence · Computer Science 2026-02-17 Jiahao Xie , Guangmo Tong

In these lecture notes, we first recall the connection between graph neural networks, Weisfeiler-Lehman tests and logics such as first-order logic and graded modal logic. We then present a modal logic in which counting modalities appear in…

Logic in Computer Science · Computer Science 2025-10-14 François Schwarzentruber

A k-regular graph on v vertices is a divisible design graph with parameters (v, k, lambda_1 ,lambda_2, m, n) if its vertex set can be partitioned into m classes of size n, such that any two different vertices from the same class have…

Combinatorics · Mathematics 2021-12-01 Vladislav V. Kabanov

Graph neural network (GNN)'s success in graph classification is closely related to the Weisfeiler-Lehman (1-WL) algorithm. By iteratively aggregating neighboring node features to a center node, both 1-WL and GNN obtain a node representation…

Machine Learning · Computer Science 2021-10-27 Muhan Zhang , Pan Li

We focus on graph classification using a graph neural network (GNN) model that precomputes the node features using a bank of neighborhood aggregation graph operators arranged in parallel. These GNN models have a natural advantage of reduced…

Machine Learning · Computer Science 2022-11-23 Siddhant Doshi , Sundeep Prabhakar Chepuri

We establish a bridge between spectral clustering and Gromov-Wasserstein Learning (GWL), a recent optimal transport-based approach to graph partitioning. This connection both explains and improves upon the state-of-the-art performance of…

Machine Learning · Computer Science 2021-03-04 Samir Chowdhury , Tom Needham

Recent papers have formulated the problem of learning graphs from data as an inverse covariance estimation with graph Laplacian constraints. While such problems are convex, existing methods cannot guarantee that solutions will have specific…

Machine Learning · Statistics 2018-05-09 Eduardo Pavez , Hilmi E. Egilmez , Antonio Ortega

Graph Neural Networks (GNNs) have become essential in high-stakes domains such as drug discovery, yet their black-box nature remains a significant barrier to trustworthiness. While self-explainable GNNs attempt to bridge this gap, they…

Machine Learning · Computer Science 2026-02-25 Chuqin Geng , Li Zhang , Haolin Ye , Ziyu Zhao , Yuhe Jiang , Tara Saba , Xinyu Wang , Xujie Si

We show that on graphs with n vertices, the 2-dimensional Weisfeiler-Leman algorithm requires at most O(n^2/log(n)) iterations to reach stabilization. This in particular shows that the previously best, trivial upper bound of O(n^2) is…

Logic in Computer Science · Computer Science 2023-06-22 Sandra Kiefer , Pascal Schweitzer

Percolation is an important topic in climate, physics, materials science, epidemiology, finance, and so on. Prediction of percolation thresholds with machine learning methods remains challenging. In this paper, we build a powerful graph…

Statistical Mechanics · Physics 2023-04-10 Hua Tian , Lirong Zhang , Youjin Deng , Wanzhou Zhang