Related papers: A Semantically Enriched Dataset based on Biomedica…
This paper investigates the relationships among key elements of the scientific research network, namely articles, researchers, and journals. We introduce a novel approach to use semantic information through the HITS algorithm-based…
With the COVID-19 pandemic, there is a growing urgency for medical community to keep up with the accelerating growth in the new coronavirus-related literature. As a result, the COVID-19 Open Research Dataset Challenge has released a corpus…
This research presents a review of main datasets that are developed for COVID-19 research. We hope this collection will continue to bring together members of the computing community, biomedical experts, and policymakers in the pursuit of…
We extract entities and relationships related to COVID-19 from a corpus of articles related to Corona virus by employing a novel entities and relationship model. The entity recognition and relationship discovery models are trained with a…
Ever-larger language models with ever-increasing capabilities are by now well-established text processing tools. Alas, information extraction tasks such as named entity recognition are still largely unaffected by this progress as they are…
Large Language Models (LLMs) have revolutionized various sectors, including healthcare where they are employed in diverse applications. Their utility is particularly significant in the context of rare diseases, where data scarcity,…
Identifying named entities is, in general, a practical and challenging task in the field of Natural Language Processing. Named Entity Recognition on the code-mixed text is further challenging due to the linguistic complexity resulting from…
The COVID-19 has brought about a significant challenge to the whole of humanity, but with a special burden upon the medical community. Clinicians must keep updated continuously about symptoms, diagnoses, and effectiveness of emergent…
Clinical Named Entity Recognition (CNER) aims to identify and classify clinical terms such as diseases, symptoms, treatments, exams, and body parts in electronic health records, which is a fundamental and crucial task for clinical and…
Manual analysis and diagnosis of COVID-19 through the examination of Computed Tomography (CT) images of the lungs can be time-consuming and result in errors, especially given high volume of patients and numerous images per patient. So, we…
The Biocreative VII Track-2 challenge consists of named entity recognition, entity-linking (or entity-normalization), and topic indexing tasks -- with entities and topics limited to chemicals for this challenge. Named entity recognition is…
In the domain of Natural Language Processing (NLP), Named Entity Recognition (NER) stands out as a pivotal mechanism for extracting structured insights from unstructured text. This manuscript offers an exhaustive exploration into the…
Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…
As scientists worldwide search for answers to the overwhelmingly unknown behind the deadly pandemic, the literature concerning COVID-19 has been growing exponentially. Keeping abreast of the body of literature at such a rapidly advancing…
We present Covidex, a search engine that exploits the latest neural ranking models to provide information access to the COVID-19 Open Research Dataset curated by the Allen Institute for AI. Our system has been online and serving users since…
The COVID-19 pandemic has sparked unprecedented mobilization of scientists, generating a deluge of papers that makes it hard for researchers to keep track and explore new directions. Search engines are designed for targeted queries, not for…
Named entity recognition (NER) is a widely applicable natural language processing task and building block of question answering, topic modeling, information retrieval, etc. In the medical domain, NER plays a crucial role by extracting…
Named Entity Recognition (NER) is an essential precursor task for many natural language applications, such as relation extraction or event extraction. Much of the NER research has been done on datasets with few classes of entity types (e.g.…
Finding answers related to a pandemic of a novel disease raises new challenges for information seeking and retrieval, as the new information becomes available gradually. TREC COVID search track aims to assist in creating search tools to aid…
This report describes the participation of two Danish universities, University of Copenhagen and Aalborg University, in the international search engine competition on COVID-19 (the 2020 TREC-COVID Challenge) organised by the U.S. National…