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We consider an \emph{approximate} version of the trace reconstruction problem, where the goal is to recover an unknown string $s\in\{0,1\}^n$ from $m$ traces (each trace is generated independently by passing $s$ through a probabilistic…

Data Structures and Algorithms · Computer Science 2021-07-21 Diptarka Chakraborty , Debarati Das , Robert Krauthgamer

We consider approximate distance oracles for edge-weighted n-vertex undirected planar graphs. Given fixed epsilon > 0, we present a (1+epsilon)-approximate distance oracle with O(n(loglog n)^2) space and O((loglog n)^3) query time. This…

Data Structures and Algorithms · Computer Science 2016-01-06 Christian Wulff-Nilsen

We construct a deterministic approximation algorithm for computing a permanent of a $0,1$ $n$ by $n$ matrix to within a multiplicative factor $(1+\epsilon)^n$, for arbitrary $\epsilon>0$. When the graph underlying the matrix is a constant…

Combinatorics · Mathematics 2007-05-23 David Gamarnik , Dmitriy Katz

The substring edit error is the operation of replacing a substring $u$ of $x$ with another string $v$, where the lengths of $u$ and $v$ are bounded by a given constant $k$. It encompasses localized insertions, deletions, and substitutions…

Information Theory · Computer Science 2025-07-21 Yuting Li , Yuanyuan Tang , Hao Lou , Ryan Gabrys , Farzad Farnoud

The advances of modern localization techniques and the wide spread of mobile devices have provided us great opportunities to collect and mine human mobility trajectories. In this work, we focus on passively collected trajectories, which are…

Computational Geometry · Computer Science 2022-04-22 Jiaxin Ding , Jie Gao , Steven Skiena

The tutorial describes the concept of edit distances applied to research and commercial contexts. We use Translation Edit Rate (TER), Levenshtein, Damerau-Levenshtein, Longest Common Subsequence and $n$-gram distances to demonstrate the…

Computation and Language · Computer Science 2024-10-10 Félix do Carmo , Diptesh Kanojia

The graph edit distance is used for comparing graphs in various domains. Due to its high computational complexity it is primarily approximated. Widely-used heuristics search for an optimal assignment of vertices based on the distance…

Data Structures and Algorithms · Computer Science 2023-12-08 Franka Bause , Christian Permann , Nils M. Kriege

We suggest a new optimization technique for minimizing the sum $\sum_{i=1}^n f_i(x)$ of $n$ non-convex real functions that satisfy a property that we call piecewise log-Lipschitz. This is by forging links between techniques in computational…

Machine Learning · Computer Science 2019-09-10 Ibrahim Jubran , Dan Feldman

Estimating the density of a distribution from its samples is a fundamental problem in statistics. Hypothesis selection addresses the setting where, in addition to a sample set, we are given $n$ candidate distributions -- referred to as…

Data Structures and Algorithms · Computer Science 2025-10-23 Maryam Aliakbarpour , Zhan Shi , Ria Stevens , Vincent X. Wang

We study algorithms for approximating pairwise similarity matrices that arise in natural language processing. Generally, computing a similarity matrix for $n$ data points requires $\Omega(n^2)$ similarity computations. This quadratic…

Machine Learning · Computer Science 2022-04-28 Archan Ray , Nicholas Monath , Andrew McCallum , Cameron Musco

The problem of finding a center string that is `close' to every given string arises and has many applications in computational biology and coding theory. This problem has two versions: the Closest String problem and the Closest Substring…

Computational Engineering, Finance, and Science · Computer Science 2007-05-23 Ming Li , Bin Ma , Lusheng Wang

We give an algorithm that computes a $(1+\epsilon)$-approximate Steiner forest in near-linear time $n \cdot 2^{(1/\epsilon)^{O(ddim^2)} (\log \log n)^2}$. This is a dramatic improvement upon the best previous result due to Chan et al., who…

Computational Geometry · Computer Science 2019-04-09 Lee-Ad Gottlieb , Yair Bartal

Approximate nearest-neighbor search is a fundamental algorithmic problem that continues to inspire study due its essential role in numerous contexts. In contrast to most prior work, which has focused on point sets, we consider…

Computational Geometry · Computer Science 2021-04-01 Ahmed Abdelkader , David M. Mount

In the Directed Latency problem, we are given an asymmetric metric on a set of vertices (or clients), and a given depot $s$. We seek a path $P$ starting at $s$ and visiting all the clients so as to minimize the sum of client waiting times…

Data Structures and Algorithms · Computer Science 2025-12-18 Jannis Blauth , Ramin Mousavi

A time series of complexity $m$ is a sequence of $m$ real valued measurements. The discrete Fr\'echet distance $d_{dF}(x,y)$ is a distance measure between two time series $x$ and $y$ of possibly different complexity. Given a set of $n$ time…

Data Structures and Algorithms · Computer Science 2025-08-12 Anne Driemel , Jan Höckendorff , Ioannis Psarros , Christian Sohler

The \v{C}ern\'y conjecture states that every $n$-state synchronizing automaton has a reset word of length at most $(n-1)^2$. We study the hardness of finding short reset words. It is known that the exact version of the problem, i.e.,…

Formal Languages and Automata Theory · Computer Science 2015-06-10 Pawel Gawrychowski , Damian Straszak

We consider the problem of approximating the girth, $g$, of an unweighted and undirected graph $G=(V,E)$ with $n$ nodes and $m$ edges. A seminal result of Itai and Rodeh [SICOMP'78] gave an additive $1$-approximation in $O(n^2)$ time, and…

Data Structures and Algorithms · Computer Science 2017-04-10 Søren Dahlgaard , Mathias Bæk Tejs Knudsen , Morten Stöckel

Given a text $T$ of length $n$ and a pattern $P$ of length $m$, the approximate pattern matching problem asks for computation of a particular \emph{distance} function between $P$ and every $m$-substring of $T$. We consider a…

Data Structures and Algorithms · Computer Science 2019-07-24 Jan Studený , Przemysław Uznański

We study the Ultrametric Violation Distance problem introduced by Cohen-Addad, Fan, Lee, and Mesmay [FOCS, 2022]. Given pairwise distances $x\in \mathbb{R}_{>0}^{\binom{[n]}{2}}$ as input, the goal is to modify the minimum number of…

Data Structures and Algorithms · Computer Science 2023-11-09 Moses Charikar , Ruiquan Gao

Knapsack is one of the most fundamental problems in theoretical computer science. In the $(1 - \epsilon)$-approximation setting, although there is a fine-grained lower bound of $(n + 1 / \epsilon) ^ {2 - o(1)}$ based on the $(\min,…

Data Structures and Algorithms · Computer Science 2025-08-12 Xiao Mao