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Modeling and simulation are transforming all fields of biology. Tools like AlphaFold have revolutionized structural biology, while molecular dynamics simulations provide invaluable insights into the behavior of macromolecules in solution or…

Subcellular Processes · Quantitative Biology 2024-12-19 Franco Nieto , Luis S. Mayorga

We study the equilibrium solutions of a sessile drop on top of a horizontal substrate when it is partially covered by another inmiscible liquid, so that part of the drop is in contact with a third fluid (typically, air). The shapes of the…

Fluid Dynamics · Physics 2022-11-11 Pablo D. Ravazzoli , Alejandro G. González , Javier A. Diez

We propose a practical way to overcome the ubiquitous problem of the overestimation of the zero-bias and zero-temperature conductance, which is associated to the use of local approximations to the exchange-correlation functional in…

Materials Science · Physics 2009-11-13 Y. Garcia , JC. Sancho-Garcia

A kidney exchange is a centrally-administered barter market where patients swap their willing yet incompatible donors. Modern kidney exchanges use 2-cycles, 3-cycles, and chains initiated by non-directed donors (altruists who are willing to…

Computer Science and Game Theory · Computer Science 2017-05-29 Gabriele Farina , John P. Dickerson , Tuomas Sandholm

The understanding of water transport in graphene oxide (GO) membranes stands out as a major theoretical problem in graphene research. Notwithstanding the intense efforts devoted to the subject in the recent years, a consolidated picture of…

Mesoscale and Nanoscale Physics · Physics 2017-03-08 A. Montessori , C. A. Amadei , G. Falcucci , M. Sega , C. D. Vecitis , S. Succi

A one-boson-exchange model for the hyperon-nucleon (\Lambda N, \Sigma N) interaction is presented. The model incorporates the standard one boson exchanges of the lowest pseudoscalar and vector meson multiplets with coupling constants fixed…

Nuclear Theory · Physics 2009-11-11 J. Haidenbauer , Ulf-G. Meißner

The spatial structure of the transition region between an insulator and an electrolyte solution was studied with x-ray scattering.The electron density profile across the n-hexane/silica sol interface (solutions with 5-nm, 7-nm, and 12-nm…

Soft Condensed Matter · Physics 2009-11-11 Aleksey M. Tikhonov

Solute transport is modeled using mixture theory, applied to the nanoparticle accumulation and concentration decay in the tissue space for different vascular configurations. A comparison of a single capillary configuration (SBC) with two…

Tissues and Organs · Quantitative Biology 2018-09-18 Sreyashi Chakraborty , Alican Ozkan , Marissa Nichole Rylander , Wendy Woodward , Pavlos Vlachos

Molecular communication (MC), one of the emerging techniques in the field of communication, is entering a new phase following several decades of foundational research. Recently, attention has shifted toward MC in liquid media, particularly…

Information Theory · Computer Science 2025-06-03 Yun-Feng Lo , Changmin Lee , Chan-Byoung Chae

In reverse osmosis (RO) and nanofiltration (NF) membranes, the polymer structure and interactions with solvent and solutes dictate the permeability and selectivity. However, these interactions have not been fully characterized within…

Soft Condensed Matter · Physics 2025-11-03 Nathanael S. Schwindt , Anthony P. Straub , Michael F. Toney , Michael R. Shirts

We recently have presented first physical predictions of a spatially hybrid model that follows the evolution of a negative streamer discharge in full three spatial dimensions; our spatially hybrid model couples a particle model in the high…

Plasma Physics · Physics 2015-03-19 Chao Li , Ute Ebert , Willem Hundsdorfer

Arrays of dopants in silicon are promising platforms for the quantum simulation of the Fermi-Hubbard model. We show that the simplest model with only on-site interaction is insufficient to describe the physics of an array of phosphorous…

Mesoscale and Nanoscale Physics · Physics 2018-01-11 Nguyen H. Le , Andrew J. Fisher , Eran Ginossar

We address a free boundary model for the compressible Euler equations where the free boundary, which is elastic, evolves according to a weakly damped fourth order hyperbolic equation forced by the fluid pressure. This system captures the…

Analysis of PDEs · Mathematics 2023-11-16 Igor Kukavica , Šárka Nečasová , Amjad Tuffaha

Lipid bilayer membranes are the fundamental biological barriers that permit life. The bilayer dynamics largely participates in orchestrating cellular workings and is characterized by substantial stability together with extreme plasticity…

Soft Condensed Matter · Physics 2022-12-05 Matteo Bottacchiari , Mirko Gallo , Marco Bussoletti , Carlo Massimo Casciola

Chirality, or the breaking of mirror symmetry, appears across all scales in nature, from molecular conformations to the dynamics of bacterial collectives. Environments composed of such symmetry-breaking constituents can give rise to…

We study transport in synthetic, bi-disperse porous structures, with arrays of microchannels interconnected by a nanoporous layer. These structures are inspired by the xylem tissue in vascular plants, in which sap water travels from the…

Soft Condensed Matter · Physics 2024-07-23 Olivier Vincent , Théo Tassin , Erik J. Huber , Abraham D. Stroock

The interaction of neural networks with physical equations offers a wide range of applications. We provide a method which enables a neural network to transform objects subject to given physical constraints. Therefore an U-Net architecture…

Artificial Intelligence · Computer Science 2021-03-22 Lukas Harsch , Johannes Burgbacher , Stefan Riedelbauch

Bioactive glasses release ions such as sodium when implanted in the human body. However, an excess of the released ions can cause problems related to cytotoxicity. The ion release control is considered one of the primary challenges in…

Materials Science · Physics 2022-05-03 Youssef Ouldhnini , Achraf Atila , Said Ouaskit , Abdellatif Hasnaoui

Microscopy of polymer electrolyte membranes that have undergone operation under fuel cell conditions, have revealed a well defined band of platinum in the membrane. Here, we propose a physics based model that captures the mechanism of…

Chemical Physics · Physics 2013-06-20 S. F. Burlatsky , M. Gummalla , V. V. Atrazhev , D. V. Dmitriev , N. Y. Kuzminyh , N. S. Erikhman

A model for ionic and electronic grain boundary transport through thin films, scales or membranes with columnar grain structure is introduced. The grain structure is idealized as a lattice of identical hexagonal cells - a honeycomb pattern.…

Materials Science · Physics 2017-05-05 M. P. Tautschnig , N. M. Harrison , M. W. Finnis