Related papers: On the maximum agreement subtree conjecture for ba…
The existence of a partition of the common set of the vertices of two forests into two subsets, when difference of their capacities in the neighborhood of each vertex of each forest not greater than 2 is proved, and an example, which shows…
In this article, we construct explicit examples of pairs of non-isomorphic trees with the same restricted $U$-polynomial for every $k$; by this we mean that the polynomials agree on terms with degree at most $k+1$. The main tool for this…
In this short note we prove that, given two (not necessarily binary) rooted phylogenetic trees T_1, T_2 on the same set of taxa X, where |X|=n, the hybridization number of T_1 and T_2 can be computed in time O^{*}(2^n) i.e. O(2^{n}…
We prove that every connected graph with $s$ vertices of degree~1 and 3 and $t$ vertices of degree at least~4 has a spanning tree with at least ${1\over 3}t +{1\over 4}s+{3\over 2}$ leaves. We present infinite series of graphs showing that…
We provide a logarithmic upper bound for the disentangling number on unordered lists of leaf labeled trees. This results is useful for analyzing phylogenetic mixture models. The proof depends on interpreting multisets of trees as high…
We introduce tree dimension and its leveled variant in order to measure the complexity of leaf sets in binary trees. We then provide a tight upper bound on the size of such sets using leveled tree dimension. This, in turn, implies both the…
We study a link between complete non-ambiguous trees (CNATs) and permutations exhibited by Daniel Chen and Sebastian Ohlig in recent work. In this, they associate a certain permutation to the leaves of a CNAT, and show that the number of…
A non-crossing spanning tree of a set of points in the plane is a spanning tree whose edges pairwise do not cross. Avis and Fukuda in 1996 proved that there always exists a flip sequence of length at most $2n-4$ between any pair of…
We develop and analyze methods for computing provably optimal {\em maximum a posteriori} (MAP) configurations for a subclass of Markov random fields defined on graphs with cycles. By decomposing the original distribution into a convex…
We consider critical multitype Bienaym\'e trees that are either irreducible or possess a critical irreducible component with attached subcritical components. These trees are studied under two distinct conditioning frameworks: first,…
This paper introduces a new combinatorial framework for modeling the growth of binary trees through a discrete evolution process that incorporates a growing rule and an extinction rule. Building upon the theory of increasingly labeled…
Given a tree of weighted vertices, it is sometimes possible to break the tree into two equally-weighted subtrees within an allowable error. We give a fast algorithm that finds an edge which breaks the tree into equal-weight components or…
We ask the question, which oriented trees $T$ must be contained as subgraphs in every finite directed graph of sufficiently large minimum out-degree. We formulate the following simple condition: all vertices in $T$ of in-degree at least $2$…
Motivated by a conjecture of Gy\'arf\'as, recently B\"ottcher, Hladk\'y, Piguet, and Taraz showed that every collection $T_1,\dots,T_t$ of trees on $n$ vertices with $\sum_{i=1}^te(T_i)\leq \binom{n}{2}$ and with bounded maximum degree, can…
We propose an algorithm named best-scored random forest for binary classification problems. The terminology "best-scored" means to select the one with the best empirical performance out of a certain number of purely random tree candidates…
Search trees on trees (STTs) generalize the fundamental binary search tree (BST) data structure: in STTs the underlying search space is an arbitrary tree, whereas in BSTs it is a path. An optimal BST of size $n$ can be computed for a given…
Phylogenetic trees are frequently used to model evolution. Such trees are typically reconstructed from data like DNA, RNA, or protein alignments using methods based on criteria like maximum parsimony (amongst others). Maximum parsimony has…
Seo and Shin showed that the number of rooted trees on $[n+1]$ such that the maximal decreasing subtree with the same root has $k+1$ vertices is equal to the number of functions $f:[n]\to[n]$ such that the image of $f$ contains $[k]$. We…
Given a Galton-Watson process conditioned to have total progeny equal to $n$, we study the asymptotic probability that this conditioned Galton-Watson process has distance to the border bigger or equal than $k$, as the number of nodes $n…
We are interested in the quantitative analysis of the compaction ratio for two classical families of trees: recursive trees and plane binary increasing trees. These families are typical representatives of tree models with a small depth.…