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Inferring a binary connectivity graph from resting-state fMRI data for a single subject requires making several methodological choices and assumptions that can significantly affect the results. In this study, we investigate the robustness…

Methodology · Statistics 2025-03-20 Alice Chevaux , Ali Fahkar , Kévin Polisano , Irène Gannaz , Sophie Achard

Understanding the structural mechanisms of multi-layer networks is essential for analyzing complex systems characterized by multiple interacting layers. This work studies the problem of estimating connection probabilities in multi-layer…

Methodology · Statistics 2026-02-26 Dingzi Guo , Diqing Li , Jingyi Wang , Wen-Xin Zhou

Plasticity is one of the most important properties of the nervous system, which enables animals to adjust their behavior to the ever-changing external environment. Changes in synaptic efficacy between neurons constitute one of the major…

Neurons and Cognition · Quantitative Biology 2018-01-23 Taishi Iwasaki , Hideitsu Hino , Masami Tatsuno , Shotaro Akaho , Noboru Murata

Seeking effective neural networks is a critical and practical field in deep learning. Besides designing the depth, type of convolution, normalization, and nonlinearities, the topological connectivity of neural networks is also important.…

Computer Vision and Pattern Recognition · Computer Science 2020-08-20 Kun Yuan , Quanquan Li , Jing Shao , Junjie Yan

The estimation of causal network architectures in the brain is fundamental for understanding cognitive information processes. However, access to the dynamic processes underlying cognition is limited to indirect measurements of the hidden…

Neurons and Cognition · Quantitative Biology 2020-08-17 H. C. Ruiz-Euler , H. J. Kappen

Existing network embedding approaches tackle the problem of learning low-dimensional node representations. However, networks can also be seen in the light of edges interlinking pairs of nodes. The broad goal of this paper is to introduce…

Social and Information Networks · Computer Science 2020-11-12 Giuseppe Pirrò

The computational inefficiency of spiking neural networks (SNNs) is primarily due to the sequential updates of membrane potential, which becomes more pronounced during extended encoding periods compared to artificial neural networks (ANNs).…

Computer Vision and Pattern Recognition · Computer Science 2024-12-31 Hanqi Chen , Lixing Yu , Shaojie Zhan , Penghui Yao , Jiankun Shao

Graph embedding is gaining its popularity for link prediction in complex networks and achieving excellent performance. However, limited work has been done in sparse networks that represent most of real networks. In this paper, we propose a…

Social and Information Networks · Computer Science 2021-04-22 Min-Ren Chen , Ping Huang , Yu Lin , Shi-Min Cai

Analysing correlations between streams of events is an important problem. It arises for example in Neurosciences, when the connectivity of neurons should be inferred from spike trains that record neurons' individual spiking activity. While…

Neurons and Cognition · Quantitative Biology 2021-08-11 Krempl , Georg , Kottke , Daniel , Pham Minh , Tuan

Objective: Modelling the associations from high-throughput experimental molecular data has provided unprecedented insights into biological pathways and signalling mechanisms. Graphical models and networks have especially proven to be useful…

Machine Learning · Statistics 2013-04-24 Marco Scutari , Radhakrishnan Nagarajan

Spiking neural networks are the basis of versatile and power-efficient information processing in the brain. Although we currently lack a detailed understanding of how these networks compute, recently developed optimization techniques allow…

Neural and Evolutionary Computing · Computer Science 2021-01-01 Benjamin Cramer , Yannik Stradmann , Johannes Schemmel , Friedemann Zenke

One major challenge in neuroscience is the identification of interrelations between signals reflecting neural activity and how information processing occurs in the neural circuits. At the cellular and molecular level, mechanisms of signal…

Applications · Statistics 2019-09-27 Giacomo Aletti , Davide Lonardoni , Giovanni Naldi , Thierry Nieus

Surface electromyography (sEMG) has demonstrated significant potential in simultaneous and proportional control (SPC). However, existing algorithms for predicting joint angles based onsEMGoften suffer fromhigh inference costs or are limited…

Human-Computer Interaction · Computer Science 2025-01-27 Xin Zhou , Chuang Lin , Can Wang , Xiaojiang Peng

The identification of genes essential for survival is important for the understanding of the minimal requirements for cellular life and for drug design. As experimental studies with the purpose of building a catalog of essential genes for a…

We study pairwise Ising models for describing the statistics of multi-neuron spike trains, using data from a simulated cortical network. We explore efficient ways of finding the optimal couplings in these models and examine their…

Quantitative Methods · Quantitative Biology 2009-05-21 Yasser Roudi , Joanna Tyrcha , John Hertz

Blood vessel networks in the brain play a crucial role in stroke research, where understanding their topology is essential for analyzing blood flow dynamics. However, extracting detailed topological vessel network information from…

Computer Vision and Pattern Recognition · Computer Science 2025-04-17 Joël Mathys , Andreas Plesner , Jorel Elmiger , Roger Wattenhofer

Edge detection (ED) is a fundamental perceptual process in computer vision, forming the structural basis for high-level reasoning tasks such as segmentation, recognition, and scene understanding. Despite substantial progress achieved by…

Computer Vision and Pattern Recognition · Computer Science 2026-02-12 Hao Shu

Brain connectivity analysis based on magnetic resonance imaging is crucial for understanding neurological mechanisms. However, edge-based connectivity inference faces significant challenges, particularly the curse of dimensionality when…

Methodology · Statistics 2025-12-23 Zijing Li , Chenhao Zeng , Shufei Ge

Edge detection with Artificial Neural Networks (ANNs) has achieved remarkable prog\-ress but faces two major challenges. First, it requires pre-training on large-scale extra data and complex designs for prior knowledge, leading to high…

Neural and Evolutionary Computing · Computer Science 2025-11-19 Yimeng Fan , Changsong Liu , Mingyang Li , Yuzhou Dai , Yanyan Liu , Wei Zhang

Spiking Neural Networks (SNNs) offer a novel computational paradigm that captures some of the efficiency of biological brains by processing through binary neural dynamic activations. Probabilistic SNN models are typically trained to…

Machine Learning · Computer Science 2021-02-08 Hyeryung Jang , Osvaldo Simeone
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