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Simulating large proteins using traditional molecular dynamics (MD) is computationally demanding. To address this challenge, we propose a novel tree-structured coarse-grained model that efficiently captures protein dynamics. By leveraging a…

Chemical Physics · Physics 2024-12-11 Jinzhen Zhu

While humans can successfully navigate using abstractions, ignoring details that are irrelevant to the task at hand, most existing robotic applications require the maintenance of a detailed environment representation which consumes a…

Robotics · Computer Science 2024-10-10 Zili Wang , Christopher Allum , Sean B. Andersson , Roberto Tron

Silicon-oxygen compounds are among the most important ones in the natural sciences, occurring as building blocks in minerals and being used in semiconductors and catalysis. Beyond the well known silicon dioxide, there are phases with…

Materials Science · Physics 2025-04-16 Linus C. Erhard , Jochen Rohrer , Karsten Albe , Volker L. Deringer

In this paper, we present a disassemble-and-pack approach for a mechanism to seek a box which contains total mechanical parts with high space utilization. Its key feature is that mechanism contains not only geometric shapes but also…

Computational Geometry · Computer Science 2018-01-09 Mingyuan Li , Xiaoheng Jiang , Ningbo Gu , Weiwei Xu , Junxiao Xue , Bing Zhou , Mingliang Xu

Origami structures enabled by folding and unfolding can create complex 3D shapes. However, even a small 3D shape can have large 2D unfoldings. The huge initial dimension of the 2D flattened structure makes fabrication difficult, and defeats…

Computational Geometry · Computer Science 2018-03-12 Zhonghua Xi , Yu-Ki Lee , Young-Joo Lee , Yun-hyeong Kim , Huangxin Wang , Yue Hao , Young-Chang Joo , In-Suk Choi , Jyh-Ming Lien

Deploying large, complex space structures is of great interest to the modern scientific world as it can provide new capabilities in obtaining scientific, communicative, and observational information. However, many theoretical mission…

Robotics · Computer Science 2020-08-10 Bryce Doerr , Richard Linares

Structure identification in cosmological simulations plays an important role in analysing simulation outputs. The definition of these structures directly impacts the inferred properties derived from these simulations. This paper proposes a…

Astrophysics of Galaxies · Physics 2025-01-16 Robel Geda , Romain Teyssier

Significant progress has been made in training large generative models for natural language and images. Yet, the advancement of 3D generative models is hindered by their substantial resource demands for training, along with inefficient,…

Computer Vision and Pattern Recognition · Computer Science 2024-09-11 Ka-Hei Hui , Aditya Sanghi , Arianna Rampini , Kamal Rahimi Malekshan , Zhengzhe Liu , Hooman Shayani , Chi-Wing Fu

Matrix configurations define noncommutative spaces endowed with extra structure including a generalized Laplace operator, and hence a metric structure. Made dynamical via matrix models, they describe rich physical systems including…

High Energy Physics - Theory · Physics 2024-03-15 Laura O. Felder , Harold C. Steinacker

This paper proposes a novel algorithm for the problem of structural image segmentation through an interactive model-based approach. Interaction is expressed in the model creation, which is done according to user traces drawn over a given…

Computer Vision and Pattern Recognition · Computer Science 2008-05-16 Alexandre Noma , Ana B. V. Graciano , Luis Augusto Consularo , Roberto M. Cesar-Jr , Isabelle Bloch

One of the most powerful techniques to study protein structures is to look for recurrent fragments (also called substructures or spatial motifs), then use them as patterns to characterize the proteins under study. An emergent trend consists…

Computational Engineering, Finance, and Science · Computer Science 2018-03-02 Wajdi Dhifli , Rabie Saidi , Engelbert Mephu Nguifo

Structure from Motion or the sparse 3D reconstruction out of individual photos is a long studied topic in computer vision. Yet none of the existing reconstruction pipelines fully addresses a progressive scenario where images are only…

Computer Vision and Pattern Recognition · Computer Science 2018-07-12 Alex Locher , Michal Havlena , Luc Van Gool

Maintaining a map online is resource-consuming while a robust navigation system usually needs environment abstraction via a well-fused map. In this paper, we propose a mapless planner which directly conducts such abstraction on the unfused…

Robotics · Computer Science 2020-11-12 Jialin Ji , Zhepei Wang , Yingjian Wang , Chao Xu , Fei Gao

This paper presents novel strategies for spawning and fusing submaps within an elastic dense 3D reconstruction system. The proposed system uses spatial understanding of the scanned environment to control memory usage growth by fusing…

Robotics · Computer Science 2021-09-21 Yiduo Wang , Milad Ramezani , Matias Mattamala , Maurice Fallon

Since their introduction in the shape analysis community, functional maps have met with considerable success due to their ability to compactly represent dense correspondences between deformable shapes, with applications ranging from shape…

Computer Vision and Pattern Recognition · Computer Science 2015-06-19 Emanuele Rodolà , Michael Moeller , Daniel Cremers

This paper presents an efficient method to perform Structured Matrix Approximation by Separation and Hierarchy (SMASH), when the original dense matrix is associated with a kernel function. Given points in a domain, a tree structure is first…

Numerical Analysis · Mathematics 2017-05-17 Difeng Cai , Edmond Chow , Yousef Saad , Yuanzhe Xi

Mixed-integer model predictive control (MI-MPC) requires the solution of a mixed-integer quadratic program (MIQP) at each sampling instant under strict timing constraints, where part of the state and control variables can only assume a…

Optimization and Control · Mathematics 2019-03-22 Pedro Hespanhol , Rien Quirynen , Stefano Di Cairano

Machine learning models fit complex algorithms to arbitrarily large datasets. These algorithms are well-known to be high on performance and low on interpretability. We use interactive visualization of slices of predictor space to address…

Machine Learning · Statistics 2021-09-08 Catherine B. Hurley , Mark O'Connell , Katarina Domijan

Most existing motion planning algorithms assume that a map (of some quality) is fully determined prior to generating a motion plan. In many emerging applications of robotics, e.g., fast-moving agile aerial robots with constrained embedded…

Robotics · Computer Science 2018-08-03 Thomas Sayre-McCord , Sertac Karaman

We tackle the challenging problem of creating full and accurate three dimensional reconstructions of botanical trees with the topological and geometric accuracy required for subsequent physical simulation, e.g. in response to wind forces.…

Computer Vision and Pattern Recognition · Computer Science 2018-12-24 Ed Quigley , Winnie Lin , Yilin Zhu , Ronald Fedkiw
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