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A tree decomposition of a graph facilitates computations by grouping vertices into bags that are interconnected in an acyclic structure, hence their importance in a plethora of problems such as query evaluation over databases and inference…
We introduce and study the {\em orderly spanning trees} of plane graphs. This algorithmic tool generalizes {\em canonical orderings}, which exist only for triconnected plane graphs. Although not every plane graph admits an orderly spanning…
We introduce a graph partitioning problem motivated by computational topology and propose two algorithms that produce approximate solutions. Specifically, given a weighted, undirected graph $G$ and a positive integer $k$, we desire to find…
We give an analogue of the Tutte polynomial for hypermaps. This polynomial can be defined as either a sum over subhypermaps, or recursively through deletion-contraction reductions where the terminal forms consist of isolated vertices. Our…
We combinatorially prove a new recurrence between the Tutte polynomials of graphs obtained by contraction of the complete graphs $K_{n}$%. This generalizes, to two variables, a relation previously obtained by the author between the…
Graphical parking functions, or $G$-parking functions, are a generalization of classical parking functions which depend on a connected multigraph $G$ having a distinguished root vertex. Gaydarov and Hopkins characterized the relationship…
We study enumerations of Dyck and ballot tilings, which are tilings of a region determined by two Dyck or ballot paths. We give bijective proofs to two formulae of enumerations of Dyck tilings through Hermite histories. We show that one of…
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…
The Tutte polynomial is originally a bivariate polynomial enumerating the colorings of a graph and of its dual graph. But it reveals more of the internal structure of the graph like its number of forests, of spanning subgraphs, and of…
Let $G$ be a connected graph. The Jacobian group (also known as the Picard group or sandpile group) of $G$ is a finite abelian group whose cardinality equals the number of spanning trees of $G$. The Jacobian group admits a canonical simply…
We associate two modules, the $G$-parking critical module and the toppling critical module, to an undirected connected graph $G$. The $G$-parking critical module and the toppling critical module are canonical modules (with suitable twists)…
Symmetric edge polytopes of graphs and root polytopes of semi-balanced digraphs are two classes of lattice polytopes whose $h^*$-polynomials have interesting properties and generalize important graph polynomials. For both classes of…
This thesis deals with the Tutte polynomial, studied from different points of view. In the first part, we address the enumeration of planar maps equipped with a spanning forest, here called forested maps, with a weight $z$ per face and a…
Recent work has shown that not only decision trees (DTs) may not be interpretable but also proposed a polynomial-time algorithm for computing one PI-explanation of a DT. This paper shows that for a wide range of classifiers, globally…
A matching complex of a simple graph $G$ is a simplicial complex with faces given by the matchings of $G$. The topology of matching complexes is mysterious; there are few graphs for which the homotopy type is known. Marietti and Testa…
We study the enumeration problem for different kind of tree parking functions introduced recently, called tree parking functions, tree parking distributions, prime tree parking functions, and prime tree parking distributions, for rooted…
We introduce a new type of generalized Turing machines (GTMs), which are intended as a tool for the mathematician who studies computability in Analysis. In a single tape cell a GTM can store a symbol, a real number, a continuous real…
Taking a Feynman categorical perspective, several key aspects of the geometry of surfaces are deduced from combinatorial constructions with graphs. This provides a direct route from combinatorics of graphs to string topology operations via…
For a given graph $G$, we construct an associated commutative algebra, whose dimension is equal to the number of $t$-labeled forests of $G$. We show that the dimension of the $k$-th graded component of this algebra also has a combinatorial…
A tree $t$-spanner $T$ of a graph $G$ is a spanning tree of $G$ such that the distance in $T$ between every pair of verices is at most $t$ times the distance in $G$ between them. There are efficient algorithms that find a tree $t\cdot…