Related papers: k-Approximate Quasiperiodicity under Hamming and E…
We prove conditional near-quadratic running time lower bounds for approximate Bichromatic Closest Pair with Euclidean, Manhattan, Hamming, or edit distance. Specifically, unless the Strong Exponential Time Hypothesis (SETH) is false, for…
Parameterized Inapproximability Hypothesis (PIH) is a central question in the field of parameterized complexity. PIH asserts that given as input a 2-CSP on $k$ variables and alphabet size $n$, it is W[1]-hard parameterized by $k$ to…
A seed in a word is a relaxed version of a period in which the occurrences of the repeating subword may overlap. We show a linear-time algorithm computing a linear-size representation of all the seeds of a word (the number of seeds might be…
We revisit the task of computing the edit distance in sublinear time. In the $(k,K)$-gap edit distance problem the task is to distinguish whether the edit distance of two strings is at most $k$ or at least $K$. It has been established by…
Given a redundant dictionary $\Phi$, represented by an $M \times N$ matrix ($\Phi \in \mathbb{R}^{M \times N}$) and a target signal $y \in \mathbb{R}^M$, the \emph{sparse approximation problem} asks to find an approximate representation of…
Given a satisfiable 3-SAT formula, how hard is it to find an assignment to the variables that has Hamming distance at most n/2 to a satisfying assignment? More generally, consider any polynomial-time verifier for any NP-complete language. A…
The study of strings is an important combinatorial field that precedes the digital computer. Strings can be very long, trillions of letters, so it is important to find compact representations. Here we first survey various forms of one…
We study the computational complexity of the graph modification problems Threshold Editing and Chain Editing, adding and deleting as few edges as possible to transform the input into a threshold (or chain) graph. In this article, we show…
We give the first approximation algorithm for mixed packing and covering semidefinite programs (SDPs) with polylogarithmic dependence on width. Mixed packing and covering SDPs constitute a fundamental algorithmic primitive with recent…
Set cover, over a universe of size $n$, may be modelled as a data-streaming problem, where the $m$ sets that comprise the instance are to be read one by one. A semi-streaming algorithm is allowed only $O(n\, \mathrm{poly}\{\log n, \log…
We give a polynomial time, $(1+\epsilon)$-approximation algorithm for the traveling repairman problem (TRP) in the Euclidean plane and on weighted trees. This improves on the known quasi-polynomial time approximation schemes for these…
In Polyamorous Scheduling, we are given an edge-weighted graph and must find a periodic schedule of matchings in this graph which minimizes the maximal weighted waiting time between consecutive occurrences of the same edge. This NP-hard…
The $H$-Free Edge Deletion problem asks, for a given graph $G$ and an integer $k$, whether it is possible to delete at most $k$ edges from $G$ to make it $H$-free, that is, not containing $H$ as an induced subgraph. The $H$-Free Edge…
We give the first constant-factor approximation for the Directed Latency problem in quasi-polynomial time. Here, the goal is to visit all nodes in an asymmetric metric with a single vehicle starting at a depot $r$ to minimize the average…
The Closest String Problem is an NP-hard problem that aims to find a string that has the minimum distance from all sequences that belong to the given set of strings. Its applications can be found in coding theory, computational biology, and…
Edit distance is a measurement of similarity between two sequences such as strings, point sequences, or polygonal curves. Many matching problems from a variety of areas, such as signal analysis, bioinformatics, etc., need to be solved in a…
Computing efficiently a robust measure of similarity or dissimilarity between graphs is a major challenge in Pattern Recognition. The Graph Edit Distance (GED) is a flexible measure of dissimilarity between graphs which arises in…
In the Maximum Independent Set problem we are asked to find a set of pairwise nonadjacent vertices in a given graph with the maximum possible cardinality. In general graphs, this classical problem is known to be NP-hard and hard to…
A quasi-metric is a distance function which satisfies the triangle inequality but is not symmetric: it can be thought of as an asymmetric metric. The central result of this thesis, developed in Chapter 3, is that a natural correspondence…
For any $T \geq 1$, there are constants $R=R(T) \geq 1$ and $\zeta=\zeta(T)>0$ and a randomized algorithm that takes as input an integer $n$ and two strings $x,y$ of length at most $n$, and runs in time $O(n^{1+\frac{1}{T}})$ and outputs an…