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The choice of a time integration scheme is a crucial aspect of any transient fluid simulation, and Smoothed-Particle Hydrodynamics (SPH) is no exception. The influence of the time integration scheme on energy balance is here addressed. To…

We review the implementation of individual particle time-stepping for N-body dynamics. We present a class of integrators derived from second order Hamiltonian splitting. In contrast to the usual implementation of individual time-stepping,…

Instrumentation and Methods for Astrophysics · Physics 2015-06-05 Federico I. Pelupessy , Jürgen Jänes , Simon F. Portegies Zwart

Molecular dynamics simulations are an important tool for describing the evolution of a chemical system with time. However, these simulations are inherently held back either by the prohibitive cost of accurate electronic structure theory…

Chemical Physics · Physics 2018-12-20 Michael Gastegger , Philipp Marquetand

Energy preserving numerical methods for a certain class of PDEs are derived, applying the partition of unity method. The methods are extended to also be applicable in combination with moving mesh methods by the rezoning approach. These…

Numerical Analysis · Mathematics 2017-10-04 Sølve Eidnes , Torbjørn Ringholm

Gyrocenter dynamics of charged particles plays a fundamental role in plasma physics. In particular, accuracy and conservation of energy are important features for correctly performing long-time simulations. For this purpose, we here propose…

Numerical Analysis · Mathematics 2020-05-26 Luigi Brugnano , Felice Iavernaro , Ruili Zhang

We study a system of Maxwell's equations that describes the time evolution of electromagnetic fields with an additional electric scalar variable to make the system amenable to a mixed finite element spatial discretization. We demonstrate…

Numerical Analysis · Mathematics 2026-01-21 Archana Arya , Kaushik Kalyanaraman

Context. The magnetic field in the solar atmosphere continually reconnects and accelerates charged particles to high energies. Simulations of the atmosphere in three dimensions that include the effects of accelerated particles can aid our…

Solar and Stellar Astrophysics · Physics 2022-10-05 L. Frogner , B. V. Gudiksen

We continue our investigation of finite deformation linear viscoelastodynamics by focusing on constructing accurate and reliable numerical schemes. The concrete thermomechanical foundation developed in the previous study paves the way for…

Numerical Analysis · Mathematics 2023-05-26 Ju Liu , Jiashen Guan

The leapfrog integrator is widely used because of its excellent stability in molecular dynamics simulation. This is recognized as being due to the existence of a discrete variational structure of the equations. We introduce a modified…

Computational Physics · Physics 2015-06-12 A. C. Maggs

In this paper, we propose a geometric integrator for nonholonomic mechanical systems. It can be applied to discrete Lagrangian systems specified through a discrete Lagrangian defined on QxQ, where Q is the configuration manifold, and a…

Numerical Analysis · Mathematics 2009-11-13 S. Ferraro , D. Iglesias , D. Martín de Diego

We introduce an energy-based model, which seems especially suited for constrained systems. The proposed model provides an alternative to the popular port-Hamiltonian framework and exhibits similar properties such as energy dissipation as…

Numerical Analysis · Mathematics 2024-12-10 R. Altmann , P. Schulze

We present a highly efficient molecular dynamics scheme for calculating the concentration profile of dopants implanted in group-IV alloy, and III-V zinc blende structure materials. Our program incorporates methods for reducing computational…

Materials Science · Physics 2009-10-31 Keith M. Beardmore , Niels Gronbech-Jensen

In this paper, exponential energy-preserving methods are formulated and analysed for solving charged-particle dynamics in a strong and constant magnetic field. The resulting method can exactly preserve the energy of the dynamics. Moreover,…

Numerical Analysis · Mathematics 2018-12-31 Bin Wang

A new approach for integration of motion in many-body systems of interacting polyatomic molecules is proposed. It is based on splitting time propagation of pseudo-variables in a modified phase space, while the real translational and…

Statistical Mechanics · Physics 2009-11-13 Igor P. Omelyan

We present a new molecular-dynamics algorithm for integrating the equations of motion for a system of particles interacting with mixed continuous/impulsive forces. This method, which we call Impulsive Verlet, is constructed using operator…

Chemical Physics · Physics 2009-10-31 Yao A. Houndonougbo , Brian B. Laird , Benedict J. Leimkuhler

Partial differential equations (PDEs) describing thermodynamically isolated systems typically possess conserved quantities (like mass, momentum, and energy) and dissipated quantities (like entropy). Preserving these conservation and…

Numerical Analysis · Mathematics 2025-12-01 Boris D. Andrews , Patrick E. Farrell

In our previous work, numerical schemes for a simplified version of 3-wave kinetic equations, in which only the simple forward-cascade terms of the collision operators are kept, have been successfully designed, especially to capture the…

Numerical Analysis · Mathematics 2025-06-10 Steven Walton , Minh-Binh Tran

Compartmentalised biochemical reactions are a ubiquitous building block of biological systems. The interplay between chemical and compartmental dynamics can drive rich and complex dynamical behaviors that are difficult to analyse…

Molecular Networks · Quantitative Biology 2023-06-16 Tommaso Bianucci , Christoph Zechner

As is well known, energy is generally deemed as one of the most important physical invariants in many conservative problems and hence it is of remarkable interest to consider numerical methods which are able to preserve it. In this paper,…

Numerical Analysis · Mathematics 2025-07-23 Wensheng Tang

Collisions are an innate part of the function of many musical instruments. Due to the nonlinear nature of contact forces, special care has to be taken in the construction of numerical schemes for simulation and sound synthesis. Finite…

Numerical Analysis · Mathematics 2015-01-08 Vasileios Chatziioannou , Maarten van Walstijn