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Here we propose a new approach to modeling gene expression based on the theory of random dynamical systems (RDS) that provides a general coupling prescription between the nodes of any given regulatory network given the dynamics of each node…

Molecular Networks · Quantitative Biology 2016-07-11 Fernando Antoneli , Renata C. Ferreira , Marcelo R. S. Briones

Dynamic task assignment involves assigning arriving tasks to a limited number of resources in order to minimize the overall cost of the assignments. To achieve optimal task assignment, it is necessary to model the assignment problem first.…

Artificial Intelligence · Computer Science 2023-06-12 Riccardo Lo Bianco , Remco Dijkman , Wim Nuijten , Willem van Jaarsveld

The field of hypothesis generation promises to reduce costs in neuroscience by narrowing the range of interventional studies needed to study various phenomena. Existing machine learning methods can generate scientific hypotheses from…

Machine Learning · Computer Science 2025-07-04 Zachary C. Brown , David Carlson

This paper proposes models of learning process in teams of individuals who collectively execute a sequence of tasks and whose actions are determined by individual skill levels and networks of interpersonal appraisals and influence. The…

Social and Information Networks · Computer Science 2016-10-03 Wenjun Mei , Noah E. Friedkin , Kyle Lewis , Francesco Bullo

This paper presents a new approach to behavioral-social dynamics of human crowds. First order models are derived based on mass conservation at the macroscopic scale, while methods of the kinetic theory are used to model the decisional…

Physics and Society · Physics 2015-01-14 Nicola Bellomo , Stefano Berrone , Livio Gibelli , Alexandre Pieri

Steady states are frequently used to investigate the long-term behaviors of (bio)-chemical systems. Recently, there has been a growing interest in network-based approaches due to their efficiency in deriving parametrizations of positive…

Dynamical Systems · Mathematics 2024-04-02 Bryan S. Hernandez , Patrick Vincent N. Lubenia

A formalism for describing the dynamics of Genetic Algorithms (GAs) using methods from statistical mechanics is applied to the problem of generalization in a perceptron with binary weights. The dynamics are solved for the case where a new…

Condensed Matter · Physics 2009-10-28 Magnus Rattray , Jonathan Shapiro

Many physical processes such as weather phenomena or fluid mechanics are governed by partial differential equations (PDEs). Modelling such dynamical systems using Neural Networks is an active research field. However, current methods are…

Machine Learning · Computer Science 2022-10-12 Andrzej Dulny , Andreas Hotho , Anna Krause

The network density matrix formalism allows for describing the dynamics of information on top of complex structures and it has been successfully used to analyze from system's robustness to perturbations to coarse graining multilayer…

Physics and Society · Physics 2023-05-03 Arsham Ghavasieh , Manlio De Domenico

We propose a simple method to estimate the parameters involved in discrete dynamical systems from time series. The method is based on the concept of controlling chaos by constant feedback. The major advantages of the method are that it…

Chaotic Dynamics · Physics 2009-11-10 P. Palaniyandi , M. Lakshmanan

In this work we propose a model for gene expression based on the theory of random dynamical systems (RDS) and show that it has a "modularity property" in the following sense: given any collection of genes that are linked in a…

Molecular Networks · Quantitative Biology 2013-05-21 Fernando Antoneli , Renata C. Ferreira , Francisco Bosco , Marcelo R. S. Briones

System identification is a common tool for estimating (linear) plant models as a basis for model-based predictive control and optimization. The current challenges in process industry, however, ask for data-driven modelling techniques that…

Systems and Control · Computer Science 2018-02-06 Paul M. J. Van den Hof , Arne G. Dankers , Harm H. M. Weerts

Process mining is concerned with deriving formal models capable of reproducing the behaviour of a given organisational process by analysing observed executions collected in an event log. The elements of an event log are finite sequences…

Databases · Computer Science 2024-07-03 Pierre Cry , András Horváth , Paolo Ballarini , Pascal Le Gall

Particle dynamics and multi-agent systems provide accurate dynamical models for studying and forecasting the behavior of complex interacting systems. They often take the form of a high-dimensional system of differential equations…

Machine Learning · Computer Science 2023-08-09 Yuxuan Liu , Scott G. McCalla , Hayden Schaeffer

Networks of dynamical systems play an important role in various domains and have motivated many studies on the control and analysis of linear dynamical networks. For linear network models considered in these studies, it is typically…

Systems and Control · Electrical Eng. & Systems 2024-05-07 Shengling Shi , Zhiyong Sun , Bart De Schutter

Complex dynamical systems, from macromolecules to ecosystems, are often modeled by stochastic differential equations. To learn such models from data, a common approach involves sparse selection among a large function library. However, we…

Soft Condensed Matter · Physics 2025-09-04 Andonis Gerardos , Pierre Ronceray

Dynamical systems modeling, particularly via systems of ordinary differential equations, has been used to effectively capture the temporal behavior of different biochemical components in signal transduction networks. Despite the recent…

Quantitative Methods · Quantitative Biology 2023-01-06 Nathaniel J. Linden , Boris Kramer , Padmini Rangamani

Modeling dynamical systems plays a crucial role in capturing and understanding complex physical phenomena. When physical models are not sufficiently accurate or hardly describable by analytical formulas, one can use generic function…

Machine Learning · Computer Science 2021-06-23 Armand Jordana , Justin Carpentier , Ludovic Righetti

When a model makes a consequential decision, e.g., denying someone a loan, it needs to additionally generate actionable, realistic feedback on what the person can do to favorably change the decision. We cast this problem through the lens of…

Artificial Intelligence · Computer Science 2022-06-22 Goutham Ramakrishnan , Yun Chan Lee , Aws Albarghouthi

Multiscale modeling of complex systems is crucial for understanding their intricacies. Data-driven multiscale modeling has emerged as a promising approach to tackle challenges associated with complex systems. On the other hand,…

Machine Learning · Computer Science 2024-03-26 Ruyi Tao , Ningning Tao , Yi-zhuang You , Jiang Zhang
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