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Nowcasting and forecasting of epidemic spreading rely on incidence series of reported cases to derive the fundamental epidemiological parameters for a given pathogen. Two relevant drawbacks for predictions are the unknown fractions of…

Populations and Evolution · Quantitative Biology 2022-08-31 Guilherme S. Costa , Wesley Cota , Silvio C. Ferreira

Classical epidemiological models assume homogeneous populations. There have been important extensions to model heterogeneous populations, when the identity of the sub-populations is known, such as age group or geographical location. Here,…

Machine Learning · Computer Science 2023-02-10 Roberto Vega , Zehra Shah , Pouria Ramazi , Russell Greiner

The emergence of an epidemic evokes the need to monitor its spread and assess and validate any mitigation measures enacted by governments and administrative bodies in real time. We present here a method to observe and quantify this spread…

Populations and Evolution · Quantitative Biology 2024-11-06 Justin Trujillo , Valerica Raicu

We consider nonparametric inference for event time distributions based on current status data. We show that in this scenario conventional mixture priors, including the popular Dirichlet process mixture prior, lead to biologically…

Methodology · Statistics 2020-09-23 Giorgio Paulon , Peter Müller , Victor G. Sal Y Rosas

The rapid transmission of the highly contagious novel coronavirus has been represented through several data-guided approaches across targeted geographies, in an attempt to understand when the pandemic will be under control and imposed…

Populations and Evolution · Quantitative Biology 2020-05-05 Joydeep Munshi , Indranil Roy , Ganesh Balasubramanian

Official freely available data about the number of infected at the finest possible level of spatial areal aggregation (Italian provinces) are used to model the spatio-temporal distribution of COVID-19 infections at local level. Data time…

Applications · Statistics 2020-03-23 Diego Giuliani , Maria Michela Dickson , Giuseppe Espa , Flavio Santi

The coronavirus which appeared in December 2019 in Wuhan has spread out worldwide and caused the death of more than 280,000 people (as of May, 11 2020). Since February 2020, doubts were raised about the numbers of confirmed cases and deaths…

Applications · Statistics 2020-05-12 Jean-François Coeurjolly

A mathematical model was developed describing the dynamic of the COVID-19 virus over a population considering that the infected can either be symptomatic or not. The model was calibrated using data on the confirmed cases and death from…

Populations and Evolution · Quantitative Biology 2020-04-14 Jayrold P. Arcede , Randy L. Caga-anan , Cheryl Q. Mentuda , Youcef Mammeri

Although stochastic models driven by latent Markov processes are widely used, the classical importance sampling methods based on the exponential tilting for these models suffers from the difficulties in computing the eigenvalues and…

Computation · Statistics 2025-10-14 Cheng-Der Fuh , Yanwei Jia , Steven Kou

We propose a generative model and an inference scheme for epidemic processes on dynamic, adaptive contact networks. Network evolution is formulated as a link-Markovian process, which is then coupled to an individual-level stochastic SIR…

Methodology · Statistics 2020-04-07 Fan Bu , Allison E. Aiello , Jason Xu , Alexander Volfovsky

Agent-based model (ABM) has been widely used to study infectious disease transmission by simulating behaviors and interactions of autonomous individuals called agents. In the ABM, agent states, for example infected or susceptible, are…

Applications · Statistics 2022-12-09 Seungha Um , Samrachana Adhikari

To better predict the dynamics of epidemics such as COVID-19, it is important not only to investigate the network of local and long-range contagious contacts but also to understand the temporal dynamics of infectiousness and detectable…

Populations and Evolution · Quantitative Biology 2025-09-03 Miguel A. Cajahuanca Ricaldi , Yaroslav Ispolatov

There is a growing interest in modeling and analyzing the spread of diseases like the SARS-CoV-2 infection using stochastic models. These models are typically analyzed quantitatively and are not often subject to validation using formal…

Populations and Evolution · Quantitative Biology 2022-11-02 Marco Roveri , Franc Ivankovic , Luigi Palopoli , Daniele Fontanelli

Coronavirus COVID-19 spreads through the population mostly based on social contact. To gauge the potential for widespread contagion, to cope with associated uncertainty and to inform its mitigation, more accurate and robust modelling is…

Estimation of prevalence of undocumented SARS-CoV-2 infections is critical for understanding the overall impact of the Covid-19 disease. In fact, unveiling uncounted cases has fundamental implications for public policy interventions…

Physics and Society · Physics 2022-01-31 Luigi Palatella , Fabio Vanni , David Lambert

We consider incomplete observations of stochastic processes governing the spread of infectious diseases through finite populations by way of contact. We propose a flexible semiparametric modeling framework with at least three advantages.…

Methodology · Statistics 2021-08-23 Michael Schweinberger , Rashmi P. Bomiriya , Sergii Babkin

We propose two stochastic models for the Coronavirus pandemic. The statistical properties of the models, in particular the correlation functions and the probability density function, have duly been computed. Our models, which generalises a…

Medical Physics · Physics 2020-12-04 Giorgio Sonnino , Fernando Mora , Pasquale Nardone

As the coronavirus disease 2019 (COVID-19) has shown profound effects on public health and the economy worldwide, it becomes crucial to assess the impact on the virus transmission and develop effective strategies to address the challenge. A…

Applications · Statistics 2022-05-12 Chih-Li Sung

The modeling of natural phenomena via a Markov process --- a process for which the future is independent of the past, given the present--- is ubiquitous in many fields of science. Within this context, it is of foremost importance to develop…

Quantum Physics · Physics 2020-03-24 Matheus Capela , Lucas C. Céleri , Kavan Modi , Rafael Chaves

Severe acute respiratory disease SARS-CoV-2 has had a found impact on public health systems and healthcare emergency response especially with respect to making decisions on the most effective measures to be taken at any given time. As…

Machine Learning · Computer Science 2023-09-19 Charithea Stylianides , Kleanthis Malialis , Panayiotis Kolios
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