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Gene selection plays a pivotal role in oncology research for improving outcome prediction accuracy and facilitating cost-effective genomic profiling for cancer patients. This paper introduces two gene selection strategies for deep…

Genomics · Quantitative Biology 2024-03-05 Akhila Krishna , Ravi Kant Gupta , Pranav Jeevan , Amit Sethi

Classification is an essential and fundamental task in machine learning, playing a cardinal role in the field of natural language processing (NLP) and computer vision (CV). In a supervised learning setting, labels are always needed for the…

Computation and Language · Computer Science 2021-02-04 Irene Li

Survival prediction is a crucial task associated with cancer diagnosis and treatment planning. This paper presents a novel approach to survival prediction by harnessing comprehensive information from CT and PET scans, along with associated…

Image and Video Processing · Electrical Eng. & Systems 2024-10-01 Aiman Farooq , Deepak Mishra , Santanu Chaudhury

Variational mutual information (MI) estimators are widely used in unsupervised representation learning methods such as contrastive predictive coding (CPC). A lower bound on MI can be obtained from a multi-class classification problem, where…

Machine Learning · Computer Science 2020-12-04 Jiaming Song , Stefano Ermon

Multi-label text classification involves extracting all relevant labels from a sentence. Given the unordered nature of these labels, we propose approaching the problem as a set prediction task. To address the correlation between labels, we…

Computation and Language · Computer Science 2024-03-15 Du Xinkai , Han Quanjie , Sun Yalin , Lv Chao , Sun Maosong

Accurate and robust cell nuclei classification is the cornerstone for a wider range of tasks in digital and Computational Pathology. However, most machine learning systems require extensive labeling from expert pathologists for each…

Quantitative Methods · Quantitative Biology 2016-12-05 Stefan Bauer , Nicolas Carion , Peter Schüffler , Thomas Fuchs , Peter Wild , Joachim M. Buhmann

Head and Neck Squamous Cell Carcinoma (HNSCC) is one of cancer type that is most distressing leading to acute pain, effecting speech and primary survival functions such as swallowing and breathing. The morbidity and mortality of HNSCC…

Genomics · Quantitative Biology 2021-05-18 Saurav Mandal , Akshansh Gupta , Waribam Pratibha Chanu

The complexities inherent to leukemia, multifaceted cancer affecting white blood cells, pose considerable diagnostic and treatment challenges, primarily due to reliance on laborious morphological analyses and expert judgment that are…

Deep Learning (DL) can predict biomarkers from cancer histopathology. Several clinically approved applications use this technology. Most approaches, however, predict categorical labels, whereas biomarkers are often continuous measurements.…

In this paper, we address the problem of multi-label classification. We consider linear classifiers and propose to learn a prior over the space of labels to directly leverage the performance of such methods. This prior takes the form of a…

Machine Learning · Computer Science 2015-06-08 Rémi Lajugie , Piotr Bojanowski , Sylvain Arlot , Francis Bach

We propose a new deep learning approach for medical imaging that copes with the problem of a small training set, the main bottleneck of deep learning, and apply it for classification of healthy and cancer cells acquired by quantitative…

Image and Video Processing · Electrical Eng. & Systems 2018-12-31 Moran Rubin , Omer Stein , Nir A. Turko , Yoav Nygate , Darina Roitshtain , Lidor Karako , Itay Barnea , Raja Giryes , Natan T. Shaked

Developing nations lack adequate number of hospitals with modern equipment and skilled doctors. Hence, a significant proportion of these nations' population, particularly in rural areas, is not able to avail specialized and timely…

Computer Vision and Pattern Recognition · Computer Science 2020-03-20 Shubham Goswami , Suril Mehta , Dhruva Sahrawat , Anubha Gupta , Ritu Gupta

Deep Neural Networks inherit spurious correlations embedded in training data and hence may fail to predict desired labels on unseen domains (or environments), which have different distributions from the domain used in training. Invariance…

Machine Learning · Statistics 2022-03-30 Shoji Toyota , Kenji Fukumizu

Multi-label charge prediction is a task to predict the corresponding accusations for legal cases, and recently becomes a hot topic. However, current studies use rough methods to deal with the label number. These methods manually set…

Computation and Language · Computer Science 2019-07-05 Duan Wei , Li Lin

CXRs are a crucial and extraordinarily common diagnostic tool, leading to heavy research for CAD solutions. However, both high classification accuracy and meaningful model predictions that respect and incorporate clinical taxonomies are…

Computer Vision and Pattern Recognition · Computer Science 2021-01-01 Haomin Chen , Shun Miao , Daguang Xu , Gregory D. Hager , Adam P. Harrison

In deep multi-instance learning, the number of applicable instances depends on the data set. In histopathology images, deep learning multi-instance learners usually assume there are hundreds to thousands instances in a bag. However, when…

Computer Vision and Pattern Recognition · Computer Science 2025-05-29 Koki Matsuishi , Tsuyoshi Okita

The rapidly emerging field of deep learning-based computational pathology has demonstrated promise in developing objective prognostic models from histology whole slide images. However, most prognostic models are either based on histology or…

Computer Vision and Pattern Recognition · Computer Science 2021-08-06 Richard J. Chen , Ming Y. Lu , Drew F. K. Williamson , Tiffany Y. Chen , Jana Lipkova , Muhammad Shaban , Maha Shady , Mane Williams , Bumjin Joo , Zahra Noor , Faisal Mahmood

Multiple instance (MI) learning with a convolutional neural network enables end-to-end training in the presence of weak image-level labels. We propose a new method for aggregating predictions from smaller regions of the image into an…

Computer Vision and Pattern Recognition · Computer Science 2018-06-14 Heather D. Couture , J. S. Marron , Charles M. Perou , Melissa A. Troester , Marc Niethammer

Data imbalance remains one of the open challenges in the contemporary machine learning. It is especially prevalent in case of medical data, such as histopathological images. Traditional data-level approaches for dealing with data imbalance…

Machine Learning · Computer Science 2021-04-20 Michał Koziarski

We apply deep learning (DL) on Magnetic resonance spectroscopy (MRS) data for the task of brain tumor detection. Medical applications often suffer from data scarcity and corruption by noise. Both of these problems are prominent in our data…

Machine Learning · Computer Science 2021-12-17 Diyuan Lu , Gerhard Kurz , Nenad Polomac , Iskra Gacheva , Elke Hattingen , Jochen Triesch