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The simmer package brings discrete-event simulation to R. It is designed as a generic yet powerful process-oriented framework. The architecture encloses a robust and fast simulation core written in C++ with automatic monitoring…

Computation · Statistics 2019-08-02 Iñaki Ucar , Bart Smeets , Arturo Azcorra

Data minimisation is a privacy enhancing principle, stating that personal data collected should be no more than necessary for the specific purpose consented by the user. Checking that a program satisfies the data minimisation principle is…

Logic in Computer Science · Computer Science 2018-01-09 Srinivas Pinisetty , Thibaud Antignac , David Sands , Gerardo Schneider

The development of user-friendly embedded prototyping systems like Arduino has made creating interactive devices more accessible. However, debugging these systems is challenging due to the intertwined nature of software and hardware issues.…

Human-Computer Interaction · Computer Science 2026-03-05 Andrea Bianchi , Zhi Lin Yap , Punn Lertjaturaphat , Austin Z. Henley , Kongpyung Justin Moon , Yoonji Kim

Routinely collected data in electronic healthcare records are often underpinned by clinical concept dictionaries. Increasingly data sets from these sources are being made available and used for research purposes, but without additional…

Computers and Society · Computer Science 2020-02-27 Robert C. Free

In this short article I introduce the knotR package, which creates two dimensional knot diagrams optimized for visual appearance using the R programming language. The knotR package is a systematic R-centric suite of software for the…

Geometric Topology · Mathematics 2016-10-12 Robin K. S. Hankin

Logs play a critical role in providing essential information for system monitoring and troubleshooting. Recently, with the success of pre-trained language models (PLMs) and large language models (LLMs) in natural language processing (NLP),…

Software Engineering · Computer Science 2025-02-03 Lipeng Ma , Weidong Yang , Sihang Jiang , Ben Fei , Mingjie Zhou , Shuhao Li , Mingyu Zhao , Bo Xu , Yanghua Xiao

Context: Logs are often the primary source of information for system developers and operations engineers to understand and diagnose the behavior of a software system in production. In many cases, logs are the only evidence available for…

Software Engineering · Computer Science 2021-12-23 Eduardo Mendes , Fabio Petrillo

The R package merlin performs flexible joint modelling of hierarchical multi-outcome data. Increasingly, multiple longitudinal biomarker measurements, possibly censored time-to-event outcomes and baseline characteristics are available.…

Computation · Statistics 2020-07-29 Emma C. Martin , Alessandro Gasparini , Michael J. Crowther

In this paper, we address the problem of manual debugging, which nowadays remains resource-intensive and in some parts archaic. This problem is especially evident in increasingly complex and distributed software systems. Therefore, our…

Software Engineering · Computer Science 2025-08-21 Dennis Schiese , Andreas Both

Runtime monitors that are specified in a stream-based monitoring language tend to be easier to understand, maintain, and reuse than those written in a standard programming language. Because of their formal semantics, such specification…

Formal Languages and Automata Theory · Computer Science 2020-11-30 Jan Baumeister , Bernd Finkbeiner , Matthis Kruse , Maximilian Schwenger

IT environments typically have logging mechanisms to monitor system health and detect issues. However, the huge volume of generated logs makes manual inspection impractical, highlighting the importance of automated log analysis in IT…

Software Engineering · Computer Science 2025-11-20 Pranjal Gupta , Karan Bhukar , Harshit Kumar , Seema Nagar , Prateeti Mohapatra , Debanjana Kar

This paper proposes an open source visual analytics tool consisting of several views and perspectives on eye movement data collected during code reading tasks when writing computer programs. Hence the focus of this work is on code and…

Human-Computer Interaction · Computer Science 2022-08-02 Ayush Kumar , Ashish Kumar , Aakanksha Prasad , Michael Burch , Shenghui Cheng , Klaus Mueller

We present Montre, a monitoring tool to search patterns specified by timed regular expressions over real-time behaviors. We use timed regular expressions as a compact, natural, and highly-expressive pattern specification language for…

Formal Languages and Automata Theory · Computer Science 2019-02-13 Dogan Ulus

A hallmark of object-oriented programming is the ability to perform computation through a set of interacting objects. A common manifestation of this style is the notion of a package, which groups a set of commonly used classes together. A…

Software Engineering · Computer Science 2014-01-21 Shahram Esmaeilsabzali , Rupak Majumdar , Thomas Wies , Damien Zufferey

PLUMED is an open-source software package that is widely used for analyzing and enhancing molecular dynamics simulations that works in conjunction with most available molecular dynamics softwares. While the computational cost of PLUMED…

Computational Physics · Physics 2025-11-05 Daniele Rapetti , Massimiliano Bonomi , Carlo Camilloni , Giovanni Bussi , Gareth A. Tribello

Pleak is a tool to capture and analyze privacy-enhanced business process models to characterize and quantify to what extent the outputs of a process leak information about its inputs. Pleak incorporates an extensible set of analysis…

In this paper, we give a brief overview of the rule-based programming system, called P$\rho$Log and illustrate its capabilities.

Logic in Computer Science · Computer Science 2021-09-07 Besik Dundua

Field data is an invaluable source of information for testers and developers because it witnesses how software systems operate in real environments, capturing scenarios and configurations relevant to end-users. Unfortunately, collecting…

Software Engineering · Computer Science 2017-08-25 Oscar Cornejo , Daniela Briola , Daniela Micucci , Leonardo Mariani

To harness the full benefit of new computing platforms, it is necessary to develop software with parallel computing capabilities. This is no less true for statisticians than for astrophysicists. The R programming language, which is perhaps…

Computation · Statistics 2017-09-08 George Ostrouchov , Wei-Chen Chen , Drew Schmidt

Runtime verification is a computing analysis paradigm based on observing a system at runtime (to check its expected behaviour) by means of monitors generated from formal specifications. Distributed runtime verification is runtime…

Software Engineering · Computer Science 2019-08-29 Giorgio Audrito , Ferruccio Damiani , Volker Stolz , Mirko Viroli
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