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Low-dimensional node embeddings play a key role in analyzing graph datasets. However, little work studies exactly what information is encoded by popular embedding methods, and how this information correlates with performance in downstream…

Machine Learning · Computer Science 2021-02-18 Sudhanshu Chanpuriya , Cameron Musco , Konstantinos Sotiropoulos , Charalampos E. Tsourakakis

A classic problem in unsupervised learning and data analysis is to find simpler and easy-to-visualize representations of the data that preserve its essential properties. A widely-used method to preserve the underlying hierarchical structure…

Data Structures and Algorithms · Computer Science 2020-08-18 Vincent Cohen-Addad , Karthik C. S. , Guillaume Lagarde

Hyperbolic-spaces are better suited to represent data with underlying hierarchical relationships, e.g., tree-like data. However, it is often necessary to incorporate, through alignment, different but related representations meaningfully.…

Machine Learning · Statistics 2020-12-03 Andrés Hoyos-Idrobo

Network embedding is a fervid topic in current networks science and observes that most real complex systems can be embedded in hidden metrics space and emerge as the geometrical property, where the geometric distance between nodes…

Physics and Society · Physics 2020-04-28 Zongning Wu , Zengru Di , Ying Fan

Unsupervised text embedding methods, such as Skip-gram and Paragraph Vector, have been attracting increasing attention due to their simplicity, scalability, and effectiveness. However, comparing to sophisticated deep learning architectures…

Computation and Language · Computer Science 2015-08-04 Jian Tang , Meng Qu , Qiaozhu Mei

Unsupervised feature learning often finds low-dimensional embeddings that capture the structure of complex data. For tasks for which prior expert topological knowledge is available, incorporating this into the learned representation may…

Machine Learning · Computer Science 2022-03-08 Robin Vandaele , Bo Kang , Jefrey Lijffijt , Tijl De Bie , Yvan Saeys

Embeddings are a basic initial feature extraction step in many machine learning models, particularly in natural language processing. An embedding attempts to map data tokens to a low-dimensional space where similar tokens are mapped to…

Machine Learning · Computer Science 2025-04-10 Golara Ahmadi Azar , Melika Emami , Alyson Fletcher , Sundeep Rangan

We propose a novel method of introducing structure into existing machine learning techniques by developing structure-based similarity and distance measures. To learn structural information, low-dimensional structure of the data is captured…

Machine Learning · Statistics 2011-10-27 Joseph Wang , Venkatesh Saligrama , David A. Castañón

Recently, there has been an interest in embedding networks in hyperbolic space, since hyperbolic space has been shown to work well in capturing graph/network structure as it can naturally reflect some properties of complex networks.…

Social and Information Networks · Computer Science 2020-11-04 Lili Wang , Ying Lu , Chenghan Huang , Soroush Vosoughi

Hyperbolic manifolds for visual representation learning allow for effective learning of semantic class hierarchies by naturally embedding tree-like structures with low distortion within a low-dimensional representation space. The highly…

Computer Vision and Pattern Recognition · Computer Science 2023-05-19 Aiden Durrant , Georgios Leontidis

Optimization tasks over relational data, such as clustering, often suffer from the prohibitive cost of join operations, which are necessary to access the full dataset. While geometric data structures like BBD trees yield fast approximation…

Databases · Computer Science 2026-03-13 Aryan Esmailpour , Stavros Sintos

Many data are naturally modeled by an unobserved hierarchical structure. In this paper we propose a flexible nonparametric prior over unknown data hierarchies. The approach uses nested stick-breaking processes to allow for trees of…

Methodology · Statistics 2010-06-08 Ryan Prescott Adams , Zoubin Ghahramani , Michael I. Jordan

Knowledge graph embeddings (KGE) have been validated as powerful methods for inferring missing links in knowledge graphs (KGs) that they typically map entities into Euclidean space and treat relations as transformations of entities.…

Machine Learning · Computer Science 2024-02-26 Wenjie Zheng , Wenxue Wang , Shu Zhao , Fulan Qian

We introduce a novel framework for learning vector representations of tree-structured geometric data focusing on 3D vascular networks. Our approach employs two sequentially trained Transformer-based autoencoders. In the first stage, the…

Image and Video Processing · Electrical Eng. & Systems 2025-06-16 James Batten , Michiel Schaap , Matthew Sinclair , Ying Bai , Ben Glocker

Despite the abundance of multi-modal data, such as image-text pairs, there has been little effort in understanding the individual entities and their different roles in the construction of these data instances. In this work, we endeavour to…

Computer Vision and Pattern Recognition · Computer Science 2021-02-05 Hai X. Pham , Ricardo Guerrero , Jiatong Li , Vladimir Pavlovic

The arrangement of network nodes in hyperbolic spaces has become a widely studied problem, motivated by numerous results suggesting the existence of hidden metric spaces behind the structure of complex networks. Although several methods…

Physics and Society · Physics 2023-02-06 Bianka Kovács , Gergely Palla

Tensor network methods provide a scalable solution to represent high-dimensional data. However, their efficacy is often limited by static, expert-defined structures that fail to adapt to evolving data correlations. We address this…

Computational Engineering, Finance, and Science · Computer Science 2026-03-31 Zheng Guo , Aditya Deshpande , Xinyu Wang , Brian C. Kiedrowski , Alex A. Gorodetsky

Retrieval-augmented generation (RAG) enables large language models (LLMs) to access external knowledge, helping mitigate hallucinations and enhance domain-specific expertise. Graph-based RAG enhances structural reasoning by introducing…

Computation and Language · Computer Science 2025-11-26 Linxiao Cao , Ruitao Wang , Jindong Li , Zhipeng Zhou , Menglin Yang

Hierarchical tree structures are common in many real-world systems, from tree roots and branches to neuronal dendrites and biologically inspired artificial neural networks, as well as in technological networks for organizing and searching…

Statistical Mechanics · Physics 2025-02-04 Davide Cipollini , Lambert Schomaker

Euclidean embeddings of data are fundamentally limited in their ability to capture latent semantic structures, which need not conform to Euclidean spatial assumptions. Here we consider an alternative, which embeds data as discrete…

Machine Learning · Computer Science 2019-05-10 Charlie Frogner , Farzaneh Mirzazadeh , Justin Solomon