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Full scale simulations of neuronal network models of the brain are challenging due to the high density of connections between neurons. This contribution reports run times shorter than the simulated span of biological time for a full scale…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-10-04 Anno C. Kurth , Johanna Senk , Dennis Terhorst , Justin Finnerty , Markus Diesmann

Rapid experimental advances now enable simultaneous electrophysiological recording of neural activity at single-cell resolution across large regions of the nervous system. Models of this neural network activity will necessarily increase in…

Neurons and Cognition · Quantitative Biology 2017-10-02 Andrea K. Barreiro , Cheng Ly

Background: Elucidating gene regulatory networks is crucial for understanding normal cell physiology and complex pathologic phenotypes. Existing computational methods for the genome-wide ``reverse engineering'' of such networks have been…

Continuous reconstructions of periodic phenomena provide powerful tools to understand, predict and model natural situations and engineering problems. In line with the recent method called Physics-Informed Neural Networks (PINN) where a…

Fluid Dynamics · Physics 2022-06-15 Gaetan Raynaud , Sebastien Houde , Frederick P. Gosselin

Intra-cortical brain-machine interfaces (iBMIs) present a promising solution to restoring and decoding brain activity lost due to injury. However, patients with such neuroprosthetics suffer from permanent skull openings resulting from the…

Machine Learning · Computer Science 2025-06-17 Jann Krausse , Alexandru Vasilache , Klaus Knobloch , Juergen Becker

In cognitive neuroscience research, Representational Dissimilarity Matrices (RDMs) are often incomplete because pairwise similarity judgments cannot always be exhaustively collected as the number of pairs rapidly increases with the number…

Neurons and Cognition · Quantitative Biology 2025-06-04 Denise Moerel , Tijl Grootswagers

Multiscale homogenization of woven composites requires detailed micromechanical evaluations, leading to high computational costs. Data-driven surrogate models based on neural networks address this challenge but often suffer from big data…

Computational Physics · Physics 2026-04-23 Ehsan Ghane , Marina A. Maia , Iuri B. C. M. Rocha , Martin Fagerström , Mohsen Mirakhalaf

In addition to being extremely non-linear, modern problems require millions if not billions of parameters to solve or at least to get a good approximation of the solution, and neural networks are known to assimilate that complexity by…

Audio and Speech Processing · Electrical Eng. & Systems 2022-01-14 Habib Ben Abdallah , Christopher J. Henry , Sheela Ramanna

Deep convolutional neural networks (CNNs) have brought breakthroughs in processing clinical electrocardiograms (ECGs), speaker-independent speech and complex images. However, typical CNNs require a fixed input size while it is common to…

Machine Learning · Computer Science 2022-10-07 Linpeng Jin

Partially inspired by features of computation in visual cortex, deep neural networks compute hierarchical representations of their inputs. While these networks have been highly successful in machine learning, it remains unclear to what…

Neurons and Cognition · Quantitative Biology 2019-11-20 Jianghong Shi , Eric Shea-Brown , Michael A. Buice

In this work we apply deep neural networks to find the non-equilibrium steady state solution to correlated open quantum many-body systems. Motivated by the ongoing search to find more powerful representations of (mixed) quantum states, we…

Quantum Physics · Physics 2025-01-13 Johannes Mellak , Enrico Arrigoni , Wolfgang von der Linden

In this paper, we propose a pre-trained-combined neural network (PTCN) as a comprehensive solution to the inverse design of an integrated photonic circuit. By utilizing both the initially pre-trained inverse and forward model with a joint…

Optics · Physics 2022-07-20 Mengwei Yuan , Gang Yang , Shijie Song , Luping Zhou , Robert Minasian , Xiaoke Yi

We study scaling convolutional neural networks (CNNs), specifically targeting Residual neural networks (ResNet), for analyzing electrocardiograms (ECGs). Although ECG signals are time-series data, CNN-based models have been shown to…

Machine Learning · Computer Science 2025-05-01 Byeong Tak Lee , Yong-Yeon Jo , Joon-Myoung Kwon

An autoassociative network of Potts units, coupled via tensor connections, has been proposed and analysed as an effective model of an extensive cortical network with distinct short- and long-range synaptic connections, but it has not been…

Neurons and Cognition · Quantitative Biology 2018-02-05 Michelangelo Naim , Vezha Boboeva , Chol Jun Kang , Alessandro Treves

A new deep neural network based on the WaveNet architecture (WNN) is presented, which is designed to grasp specific patterns in the NMR spectra. When trained at a fixed non-uniform sampling (NUS) schedule, the WNN benefits from pattern…

Biomolecules · Quantitative Biology 2022-12-05 Amir Jahangiri , Xiao Han , Dmitry Lesovoy , Tatiana Agback , Peter Agback , Adnane Achour , Vladislav Orekhov

Neuromorphic computing is henceforth a major research field for both academic and industrial actors. As opposed to Von Neumann machines, brain-inspired processors aim at bringing closer the memory and the computational elements to…

Neural and Evolutionary Computing · Computer Science 2020-05-05 Maxence Bouvier , Alexandre Valentian , Thomas Mesquida , François Rummens , Marina Reyboz , Elisa Vianello , Edith Beigné

Recurrent Neural Networks (RNNs) are popular models of brain function. The typical training strategy is to adjust their input-output behavior so that it matches that of the biological circuit of interest. Even though this strategy ensures…

Neurons and Cognition · Quantitative Biology 2020-11-09 Alessandro Salatiello , Martin A. Giese

Recent work [1] has utilized Moore-Penrose (MP) inverse in deep convolutional neural network (DCNN) learning, which achieves better generalization performance over the DCNN with a stochastic gradient descent (SGD) pipeline. However, Yang's…

Machine Learning · Computer Science 2021-01-06 Wandong Zhang , Yimin Yang , Jonathan Wu

In this work, we study physics-informed neural networks (PINNs) constrained by partial differential equations (PDEs) and their application in approximating PDEs with two characteristic scales. From a continuous perspective, our formulation…

Optimization and Control · Mathematics 2024-09-06 Michael Hintermüller , Denis Korolev

Repeating patterns of spike sequences from a neuronal network have been proposed to be useful in the reconstruction of the network topology. Reverberations in a physiologically realistic model with various physical connection topologies…

Neurons and Cognition · Quantitative Biology 2014-07-15 Hao Song , Chun-Chung Chen , Jyh-Jang Sun , Pik-Yin Lai , C. K. Chan