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We present results from an experiment similar to one performed by Packard (1988), in which a genetic algorithm is used to evolve cellular automata (CA) to perform a particular computational task. Packard examined the frequency of evolved CA…

adap-org · Physics 2008-02-03 Melanie Mitchell , Peter Hraber , James P. Crutchfield

The evolution of marginally bound supercluster-like objects in an accelerating LambdaCDM Universe is followed, by means of cosmological simulations, from the present time to an expansion factor a = 100. The objects are identified on the…

From genomes and ecosystems to bureaucracies and cities, the growth of complex systems occurs by adding new types of functions and expanding existing ones. We present a simple generative model that generalizes the Yule-Simon process by…

Results of experimental investigation are presented of evolutionary dynamics of several stochastic pattern formation and growth models designed by modifications of the famous mathematical Game of Life. The modifications are two-fold: Game…

Cellular Automata and Lattice Gases · Physics 2013-10-30 Leonid Yaroslavsky

The present study gives a mathematical framework for self-evolution within autonomous problem solving systems. Special attention is set on universal abstraction, thereof generation by net block homomorphism, consequently multiple order…

Artificial Intelligence · Computer Science 2013-08-27 Seppo Ilari Tirri

Development combines three basic processes asymmetric --- cell division, signaling and gene regulation --- in a multitude of ways to create an overwhelming diversity of multicellular life-forms. Here, we attempt to chart this diversity…

Molecular Networks · Quantitative Biology 2020-01-01 Somya Mani , Tsvi Tlusty

In a probabilistic cellular automaton in which all local transitions have positive probability, the problem of keeping a bit of information indefinitely is nontrivial, even in an infinite automaton. Still, there is a solution in 2…

Probability · Mathematics 2024-01-26 Peter Gacs

We investigate the evolutionary dynamics of an idealised model for the robust self-assembly of two-dimensional structures called polyominoes. The model includes rules that encode interactions between sets of square tiles that drive the…

Populations and Evolution · Quantitative Biology 2013-09-03 Iain G. Johnston , Sebastian A. Ahnert , Jonathan P. K. Doye , Ard A. Louis

Gene expression is inherently noisy, posing a challenge to understanding how precise and reproducible patterns of gene expression emerge in mammals. We investigate this phenomenon using gastruloids, an in vitro model for early mammalian…

Cell Behavior · Quantitative Biology 2025-11-19 Melody Merle , Leah Friedman , Corinne Chureau , Armin Shoushtarizadeh , Thomas Gregor

A novel theory for cell differentiation is proposed, based on simulations with interacting artificial cells which have metabolic networks within, and divide into two when the final product is accumulated. Results of simulations with coupled…

adap-org · Physics 2015-06-30 Kunihiko Kaneko , Tetsuya Yomo

In recent years, many design automation methods have been developed to routinely create approximate implementations of circuits and programs that show excellent trade-offs between the quality of output and required resources. This paper…

Neural and Evolutionary Computing · Computer Science 2021-08-17 Lukas Sekanina

The Lenski experiment is a long term daily reproduction of Escherichia coli, that has evidenced phenotypic and genetic evolutions along the years. Some mathematical models, that could be usefull in understanding the results of that…

Populations and Evolution · Quantitative Biology 2013-10-03 Bernard Ycart , Agnès Hamon , Joël Gaffé , Dominique Schneider

We proposed an evolving network model constituted by the same nodes but different edges. The competition between nodes and different links were introduced. Scale free properties have been found in this model by continuum theory. Different…

Statistical Mechanics · Physics 2013-05-29 Jie Sun , Yizhi Ge , Sheng Li

Large Language Models (LLMs) have reshaped our world with significant advancements in science, engineering, and society through applications ranging from scientific discoveries and medical diagnostics to Chatbots. Despite their ubiquity and…

Artificial Intelligence · Computer Science 2025-08-26 Kushal Raj Bhandari , Pin-Yu Chen , Jianxi Gao

The theory of cellular automata in operational probabilistic theories is developed. We start introducing the composition of infinitely many elementary systems, and then use this notion to define update rules for such infinite composite…

Quantum Physics · Physics 2021-07-09 Paolo Perinotti

Recent embedding-based methods have achieved great successes in exploiting entity alignment from knowledge graph (KG) embeddings of multiple modalities. In this paper, we study embedding-based entity alignment (EEA) from a perspective of…

Computation and Language · Computer Science 2024-02-27 Lingbing Guo , Zhuo Chen , Jiaoyan Chen , Yin Fang , Wen Zhang , Huajun Chen

The evolution of complexity has been a central theme for Biology [2] and Artificial Life research [1]. It is generally agreed that complexity has increased in our universe, giving way to life, multi-cellularity, societies, and systems of…

Populations and Evolution · Quantitative Biology 2011-09-06 Carlos Gershenson , Tom Lenaerts

We study the probabilities of evolution based on random mutations and natural selection. We conclude that evolution to multicellular eukaryots, or even prokaryots, is unlikely to be the result of only random mutations. Complex organisms…

Populations and Evolution · Quantitative Biology 2007-05-23 B. Hoeneisen , G. Trueba

Artificial Intelligence (AI) agents have rapidly evolved from specialized, rule-based programs to versatile, learning-driven autonomous systems capable of perception, reasoning, and action in complex environments. The explosion of data,…

Can AI autonomously design mechanisms for computer systems on par with the creativity and reasoning of human experts? We present Glia, an AI architecture for networked systems design that uses large language models (LLMs) in a…